Rh3DG157500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008470
Physical Location & Seq
Reverse (-)
13548982 .. 13552038
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG157500.1

Sequence Viewer

Length: 639 bp
ATGAGCTCCTTCAGCAGCACCACCAACTTCGACAATCTCATGCTCCAAACCCTCATGGGTCGCCTCCAAATCCGACCCCCAACCACCGCCAACAACAACTCCTTCCTCTCCCAAACCCTCGAAGACCTCCTCTTCGACGCCGCCAACCTCTCCGCCGACGACGACGACGACGAGAACAAGACCCAGCTCGCCAAGGAGGAGTCCAAGCTCGAGAGGGAGATCATCCGGGTCATCCTCACCGGCAACACCGATTCGCTCAAGCCCAATTCGGGTCAGGCCGTTACGATTGGGGAGCACCACATTTGCGTAGGGTTTCACGAGGAAACGGGTTCGGATTATCGGGTCTGGGAGTGGCACGGCCATATTATGCTGTTTGATGAAGAAAACGGGTACACGCCGGAGTATATATACGGGAATTACTTTGAGAGATTGATTGGGAAGGCGCGTGGTGGAAGTAGCGGCGGTGGTGGTCGTGGTGAAGAGGTGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGAAGGTGGGGAATTTGGGGCTCAGGGAATTGATCGATGGTGTGGAGGATTCCGGTCTGGCTCGGATTGTTCATCGGAATATCAATGCCAATGCCGGTTCTACAACTACCGCAAGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.57

Weight (kDa)

4.59

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 445
AciI CCGC 6 cut(s) 87, 141, 153, 459, 462, 627
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 269
AluBI AGCT 3 cut(s) 6, 187, 208
AluI AGCT 3 cut(s) 6, 187, 208
Alw21I GWGCWC 2 cut(s) 8, 297
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 276, 358
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspLEI GCGC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 3 cut(s) 229, 488, 496
AvaI CYCGRG 1 cut(s) 209
BanII GRGCYC 2 cut(s) 8, 540
BauI CACGAG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 8, 297
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 548
BceAI ACGGC 2 cut(s) 263, 373
BcnI CCSGG 1 cut(s) 227
BisI GCNGC 3 cut(s) 16, 141, 460
BlsI GCNGC 3 cut(s) 17, 142, 461
Bme1390I CCNGG 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 227
Bsa29I ATCGAT 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 2 cut(s) 239, 611
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 222, 231
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 553
BseRI GAGGAG 9 cut(s) 119, 212, 506, 509, 512, 515, 518, 521, 524
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 278, 360
BshVI ATCGAT 1 cut(s) 552
BsiHKAI GWGCWC 2 cut(s) 8, 297
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 5 cut(s) 226, 240, 398, 570, 612
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 2 cut(s) 278, 360
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 8, 297, 540
Bsp143I GATC 2 cut(s) 219, 549
BspACI CCGC 6 cut(s) 87, 141, 153, 459, 462, 627
BspANI GGCC 2 cut(s) 278, 360
BspCNI CTCAG 1 cut(s) 552
BspDI ATCGAT 1 cut(s) 552
BspFNI CGCG 1 cut(s) 445
BsrFI RCCGGY 2 cut(s) 239, 611
BssAI RCCGGY 2 cut(s) 239, 611
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 219, 549
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 137, 474
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 539, 636
BstF5I GGATG 2 cut(s) 222, 231
BstFNI CGCG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 2 cut(s) 222, 552
BstMBI GATC 2 cut(s) 219, 549
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 225
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 2 cut(s) 278, 360
BsuTUI ATCGAT 1 cut(s) 552
BtsCI GGATG 2 cut(s) 222, 231
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 2 cut(s) 239, 611
ClaI ATCGAT 1 cut(s) 552
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 391
CviAII CATG 2 cut(s) 40, 55
CviJI RGCY 8 cut(s) 6, 187, 208, 262, 278, 360, 538, 578
CviKI_1 RGCY 8 cut(s) 6, 187, 208, 262, 278, 360, 538, 578
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 539, 636
DpnI GATC 2 cut(s) 221, 551
DpnII GATC 2 cut(s) 219, 549
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 137, 474
EarI CTCTTC 2 cut(s) 137, 474
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 2 cut(s) 8, 540
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 8, 540
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 43, 58
FaiI YATR 7 cut(s) 41, 56, 363, 368, 405, 407, 409
FatI CATG 2 cut(s) 39, 54
Fnu4HI GCNGC 3 cut(s) 16, 141, 460
FokI GGATG 2 cut(s) 209, 218
FriOI GRGCYC 2 cut(s) 8, 540
Fsp4HI GCNGC 3 cut(s) 16, 141, 460
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 16, 141, 460
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 278, 360
HapII CCGG 5 cut(s) 226, 240, 398, 570, 612
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 43, 58
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 3 cut(s) 200, 251, 566
HpaII CCGG 5 cut(s) 226, 240, 398, 570, 612
HphI GGTGA 3 cut(s) 229, 488, 496
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 4 cut(s) 74, 334, 582, 594
Hpy188III TCNNGA 2 cut(s) 211, 317
Hpy8I GTNNAC 1 cut(s) 393
Hpy99I CGWCG 6 cut(s) 140, 161, 164, 167, 170, 173
HpyAV CCTTC 4 cut(s) 19, 112, 433, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 539, 636
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 43, 58
HspAI GCGC 1 cut(s) 443
Kzo9I GATC 2 cut(s) 219, 549
LmnI GCTCC 3 cut(s) 11, 48, 292
Lsp1109I GCAGC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 221, 551
MboI GATC 2 cut(s) 219, 549
MboII GAAGA 4 cut(s) 124, 134, 392, 491
MhlI GDGCHC 3 cut(s) 8, 297, 540
MluCI AATT 4 cut(s) 265, 415, 529, 545
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 97
MspI CCGG 5 cut(s) 226, 240, 398, 570, 612
MspR9I CCNGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 227
NdeII GATC 2 cut(s) 219, 549
NlaIII CATG 2 cut(s) 43, 58
PaeR7I CTCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 168
PfeI GAWTC 2 cut(s) 251, 566
PkrI GCNGC 3 cut(s) 17, 142, 461
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 183
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 3 cut(s) 16, 141, 460
Sau3AI GATC 2 cut(s) 219, 549
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 3 cut(s) 8, 297, 540
SetI ASST 7 cut(s) 8, 129, 150, 189, 210, 486, 525
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 209, 257
SmoI CTYRAG 2 cut(s) 209, 257
Sse9I AATT 4 cut(s) 265, 415, 529, 545
SsiI CCGC 6 cut(s) 87, 141, 153, 459, 462, 627
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 5 cut(s) 30, 120, 135, 210, 552
TasI AATT 4 cut(s) 265, 415, 529, 545
TauI GCSGC 2 cut(s) 143, 462
TfiI GAWTC 2 cut(s) 251, 566
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 393, 578
XapI RAATTY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.