Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008470

Physical Location & Seq

Genomic Coordinates Forward (+)

36544299 .. 36546399

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCTCCTTCAGCAGCACCACCAACTTCGACAACCTGATGCTCCAAACCCTCATGGGTCGCCTCCAAATCCGACCCCCAACCACCACCGCTAACAACAGCTCCTTCCTCTCCCAAACCCTCGAGGACCTCCTCTTCGACGCCGCCAACCTCTCCGCCGACGACGACGACGACGAGAACAAGACCCAGCTCGCCAAGGAGGAGTCCAAGCTCGAGAGGGAGATCATCCGGGTCATCCTCACCGGCAACACCGATTCGCTCAAGCCCAATTCGGGTCAGGCCGTCACGATCGGGGAGCACCACATTTGCGTCGGGTTTCACGAGGAAACGGGTTCGGATTATCGGGTCTGGGAGTGGCACGGCCATATTATGCTGTTTGATGAAGAAAACGGGTACACGCCGGAGTATATATACGGGAATTACTTTGAGAGATTGATTGGGAAGGCGCGTGGTGGAAGTAGCGGCGGCGGTGGTCGTGGTGAAGAGGTGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGAAGGTGGGGAATTTGGGGCTCAGGGAATTGATTGATGGTGTGGAGGATTCGGGTCTGGCTCGGATTGTTCATAGGAATATCAATGCCAATGCCAGTTCTACAACTACCGCAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.68

Weight (kDa)

4.59

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55710 AT3G53342 AT3G53630 AT3G53630 AT4G18692
fragaria_vesca	FvH4_6g14340
malus_domestica	MD04G1120700.v1.1 MD12G1138000.v1.1
prunus_persica	Prupe.6G250000_v2.0.a1
pyrus_communis	pycom04g10980
rosa_chinensis	RchiOBHm_Chr3g0467391
rosa_laevigata	RLG00000024508
rosa_multiflora	Rmu_co8238267.1_g000001 Rmu_sc0001601.1_g000013 Rmu_sc0012351.1_g000008
rosa_roxburghii	Rroxscaffold_6G00413710
rosa_rugosa	Rorug03G0086500 Rorug03G0086500
rosa_samantha	Rh3AG135200 Rh3BG156700 Rh3CG156500 Rh3DG157500
rosa_wichuraiana	Rw3G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	448
AciI	CCGC	7 cut(s)	90, 144, 156, 462, 465, 468, 630
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	272
AluBI	AGCT	4 cut(s)	6, 102, 190, 211
AluI	AGCT	4 cut(s)	6, 102, 190, 211
Alw21I	GWGCWC	2 cut(s)	8, 300
Ama87I	CYCGRG	2 cut(s)	122, 212
AoxI	GGCC	2 cut(s)	279, 361
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	532
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	232, 491, 499
AvaI	CYCGRG	2 cut(s)	122, 212
AvaII	GGWCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	8, 543
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	2 cut(s)	8, 300
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	2 cut(s)	266, 376
BcnI	CCSGG	1 cut(s)	230
BisI	GCNGC	4 cut(s)	16, 144, 463, 466
BlsI	GCNGC	4 cut(s)	17, 145, 464, 467
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	2 cut(s)	122, 212
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	225, 234
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	9 cut(s)	122, 215, 509, 512, 515, 518, 521, 524, 527
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	448
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	281, 363
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	8, 300
BsiHKCI	CYCGRG	2 cut(s)	122, 212
BsiSI	CCGG	3 cut(s)	229, 243, 401
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	2 cut(s)	281, 363
BsoBI	CYCGRG	2 cut(s)	122, 212
Bsp1286I	GDGCHC	3 cut(s)	8, 300, 543
Bsp143I	GATC	2 cut(s)	222, 288
BspACI	CCGC	7 cut(s)	90, 144, 156, 462, 465, 468, 630
BspANI	GGCC	2 cut(s)	281, 363
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	222, 288
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	140, 477
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	542, 639
BstF5I	GGATG	2 cut(s)	225, 234
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	225, 291
BstMBI	GATC	2 cut(s)	222, 288
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	281, 363
BtsCI	GGATG	2 cut(s)	225, 234
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	2 cut(s)	149, 298
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	9 cut(s)	6, 102, 190, 211, 265, 281, 363, 541, 581
CviKI_1	RGCY	9 cut(s)	6, 102, 190, 211, 265, 281, 363, 541, 581
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	542, 639
DpnI	GATC	2 cut(s)	224, 290
DpnII	GATC	2 cut(s)	222, 288
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	140, 477
EarI	CTCTTC	2 cut(s)	140, 477
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	8, 543
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	2 cut(s)	122, 212
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	8, 543
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	58
FaiI	YATR	7 cut(s)	56, 366, 371, 408, 410, 412, 594
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	16, 144, 463, 466
FokI	GGATG	2 cut(s)	212, 221
FriOI	GRGCYC	2 cut(s)	8, 543
Fsp4HI	GCNGC	4 cut(s)	16, 144, 463, 466
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	16, 144, 463, 466
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	281, 363
HapII	CCGG	3 cut(s)	229, 243, 401
HgaI	GACGC	2 cut(s)	149, 298
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	203, 254, 569
HpaII	CCGG	3 cut(s)	229, 243, 401
HphI	GGTGA	3 cut(s)	232, 491, 499
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	3 cut(s)	74, 337, 585
Hpy188III	TCNNGA	3 cut(s)	214, 286, 320
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	7 cut(s)	143, 164, 167, 170, 173, 176, 314
HpyAV	CCTTC	4 cut(s)	19, 115, 436, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	542, 639
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	222, 288
LmnI	GCTCC	4 cut(s)	11, 48, 107, 295
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	224, 290
MboI	GATC	2 cut(s)	222, 288
MboII	GAAGA	3 cut(s)	127, 395, 494
MhlI	GDGCHC	3 cut(s)	8, 300, 543
MluCI	AATT	4 cut(s)	268, 418, 532, 548
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	97
MspI	CCGG	3 cut(s)	229, 243, 401
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	222, 288
NlaIII	CATG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	283
PaeR7I	CTCGAG	2 cut(s)	122, 212
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 171, 318
PfeI	GAWTC	2 cut(s)	254, 569
PkrI	GCNGC	4 cut(s)	17, 145, 464, 467
Ple19I	CGATCG	1 cut(s)	291
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	4 cut(s)	16, 144, 463, 466
Sau3AI	GATC	2 cut(s)	222, 288
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	3 cut(s)	8, 300, 543
SetI	ASST	9 cut(s)	8, 39, 104, 132, 153, 192, 213, 489, 528
SfaNI	GCATC	1 cut(s)	30
Sfr274I	CTCGAG	2 cut(s)	122, 212
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	2 cut(s)	122, 212
SmlI	CTYRAG	3 cut(s)	122, 212, 260
SmoI	CTYRAG	3 cut(s)	122, 212, 260
Sse9I	AATT	4 cut(s)	268, 418, 532, 548
SsiI	CCGC	7 cut(s)	90, 144, 156, 462, 465, 468, 630
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	4 cut(s)	30, 123, 138, 213
TasI	AATT	4 cut(s)	268, 418, 532, 548
TauI	GCSGC	3 cut(s)	146, 465, 468
TfiI	GAWTC	2 cut(s)	254, 569
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	396, 581
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	532
XhoI	CTCGAG	2 cut(s)	122, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.