Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008470

Physical Location & Seq

Genomic Coordinates Reverse (-)

12579097 .. 12581585

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCTCCTTCAGCAGCACCACCAACTTCGACAACCTGATGCTCCAAACCCTCATGGGTCGCCTCCAAATCCGACCCCCAACCACCACCGCCAACAACAACTCCTTCCTCTCCCAAACCCTCGAAGACCTCCTCTTCGACGCCGCCAACCTCTCCGCCGCCGACGACGACGACGACGAGAACAAGACCCAGCTCGCCAAGGAGGAGTCCAAGCTCGAGAGGGAGATCATCCGGGTCATCCTCACCGGCAACACCGATTCGCTCAAGCCCAATTCGGGTCAGGCCGTCACGATTGGGGAGCACCACATTTGCGTCGGGTTTCACGAGGAAACGGGTTCGGATTATCGGGTTTGGGAGTGGCACGGCCATATTATGCTGTTTGATGAAGAAAACGGGTACACGCCGGAGTATATATACGGGAATTACTTTGAGAGATTGATTGGGAAGGCGCGTGGTGGAAGTAGCGGCGGTGGTGGTCGTGGTGAAGAGGTGAAAGAGGAGGAGGAGGAGGAGGAGAAAGAGAAGGTGGGGAATTTGGGGCTCAGGGAATTGATCGATGGTGTGGAGGATTCCGGTCAGGCTCGGATTGTTCATCGGAATATCAATGCCAATGCCGGTTCTACAACAACCGCAAGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.63

Weight (kDa)

4.62

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55710 AT3G53342 AT3G53630 AT3G53630 AT4G18692
fragaria_vesca	FvH4_6g14340
malus_domestica	MD04G1120700.v1.1 MD12G1138000.v1.1
prunus_persica	Prupe.6G250000_v2.0.a1
pyrus_communis	pycom04g10980
rosa_chinensis	RchiOBHm_Chr3g0467391
rosa_laevigata	RLG00000024508
rosa_multiflora	Rmu_co8238267.1_g000001 Rmu_sc0001601.1_g000013 Rmu_sc0012351.1_g000008
rosa_roxburghii	Rroxscaffold_6G00413710
rosa_rugosa	Rorug03G0086500 Rorug03G0086500
rosa_samantha	Rh3AG135200 Rh3BG156700 Rh3CG156500 Rh3DG157500
rosa_wichuraiana	Rw3G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	451
AciI	CCGC	7 cut(s)	90, 144, 156, 159, 465, 468, 630
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	532
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	6, 193, 214
AluI	AGCT	3 cut(s)	6, 193, 214
Alw21I	GWGCWC	2 cut(s)	8, 303
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	282, 364
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	532
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	235, 494, 502
AvaI	CYCGRG	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	8, 543
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	8, 303
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	2 cut(s)	269, 379
BcnI	CCSGG	1 cut(s)	233
BisI	GCNGC	4 cut(s)	16, 144, 159, 466
BlsI	GCNGC	4 cut(s)	17, 145, 160, 467
Bme1390I	CCNGG	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	2 cut(s)	245, 614
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	228, 237
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	556
BseRI	GAGGAG	8 cut(s)	122, 218, 512, 515, 518, 521, 524, 527
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	284, 366
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	2 cut(s)	8, 303
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	232, 246, 404, 573, 615
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	2 cut(s)	284, 366
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	8, 303, 543
Bsp143I	GATC	2 cut(s)	225, 552
BspACI	CCGC	7 cut(s)	90, 144, 156, 159, 465, 468, 630
BspANI	GGCC	2 cut(s)	284, 366
BspCNI	CTCAG	1 cut(s)	555
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	245, 614
BssAI	RCCGGY	2 cut(s)	245, 614
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	225, 552
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	140, 480
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	542, 639
BstF5I	GGATG	2 cut(s)	228, 237
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	228, 555
BstMBI	GATC	2 cut(s)	225, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	284, 366
BsuTUI	ATCGAT	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	228, 237
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	2 cut(s)	245, 614
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	2 cut(s)	149, 301
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	8 cut(s)	6, 193, 214, 268, 284, 366, 541, 581
CviKI_1	RGCY	8 cut(s)	6, 193, 214, 268, 284, 366, 541, 581
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	542, 639
DpnI	GATC	2 cut(s)	227, 554
DpnII	GATC	2 cut(s)	225, 552
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	140, 480
EarI	CTCTTC	2 cut(s)	140, 480
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	8, 543
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	8, 543
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	58
FaiI	YATR	6 cut(s)	56, 369, 374, 411, 413, 415
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	16, 144, 159, 466
FokI	GGATG	2 cut(s)	215, 224
FriOI	GRGCYC	2 cut(s)	8, 543
Fsp4HI	GCNGC	4 cut(s)	16, 144, 159, 466
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	16, 144, 159, 466
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	284, 366
HapII	CCGG	5 cut(s)	232, 246, 404, 573, 615
HgaI	GACGC	2 cut(s)	149, 301
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	3 cut(s)	206, 257, 569
HpaII	CCGG	5 cut(s)	232, 246, 404, 573, 615
HphI	GGTGA	3 cut(s)	235, 494, 502
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	74, 340, 585, 597
Hpy188III	TCNNGA	3 cut(s)	217, 289, 323
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	7 cut(s)	143, 167, 170, 173, 176, 179, 317
HpyAV	CCTTC	4 cut(s)	19, 115, 439, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	542, 639
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	225, 552
LmnI	GCTCC	3 cut(s)	11, 48, 298
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	227, 554
MboI	GATC	2 cut(s)	225, 552
MboII	GAAGA	4 cut(s)	127, 137, 398, 497
MhlI	GDGCHC	3 cut(s)	8, 303, 543
MluCI	AATT	4 cut(s)	271, 421, 532, 548
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	97
MspI	CCGG	5 cut(s)	232, 246, 404, 573, 615
MspR9I	CCNGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	225, 552
NlaIII	CATG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	3 cut(s)	171, 174, 321
PfeI	GAWTC	2 cut(s)	257, 569
PkrI	GCNGC	4 cut(s)	17, 145, 160, 467
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	4 cut(s)	16, 144, 159, 466
Sau3AI	GATC	2 cut(s)	225, 552
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	3 cut(s)	8, 303, 543
SetI	ASST	8 cut(s)	8, 39, 132, 153, 195, 216, 492, 528
SfaNI	GCATC	1 cut(s)	30
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	215, 263
SmoI	CTYRAG	2 cut(s)	215, 263
Sse9I	AATT	4 cut(s)	271, 421, 532, 548
SsiI	CCGC	7 cut(s)	90, 144, 156, 159, 465, 468, 630
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	5 cut(s)	30, 123, 138, 216, 555
TasI	AATT	4 cut(s)	271, 421, 532, 548
TauI	GCSGC	3 cut(s)	146, 161, 468
TfiI	GAWTC	2 cut(s)	257, 569
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	399, 581
XapI	RAATTY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.