Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238267.1

Orthogroup ID

OG0008470

Physical Location & Seq

Genomic Coordinates Reverse (-)

285 .. 768

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

cgacgacgacgacgagaacaagacccagctcgccaaggaggagtccaagctcgagagggagatcatccgggtcatcctcaccggcaacaccgattcgctcaagcccaattcgggtcaggccgtcacgattggggagcaccacatttgcgtcgggtttcacgaggaaacgggttcggattatcgggtctgggagtggcacggccatattatgctgtttgatgaagaaaacgggtacacgccggagtatatatacgggaattactttgagagattgattgggaaggcgcgtggtggaagtagcggcggtggtggtcgtggtgaagaggtgaaagaggaggaggaggaggaggaggagaaagagaaggtggggaatttggggctcagggaattgatcgatggtgtggaggattccggtctggctcggattgttcatcggaatatcaatgccaatgccggttctacaactaccgcaaggtttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.88

Weight (kDa)

4.69

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55710 AT3G53342 AT3G53630 AT3G53630 AT4G18692
fragaria_vesca	FvH4_6g14340
malus_domestica	MD04G1120700.v1.1 MD12G1138000.v1.1
prunus_persica	Prupe.6G250000_v2.0.a1
pyrus_communis	pycom04g10980
rosa_chinensis	RchiOBHm_Chr3g0467391
rosa_laevigata	RLG00000024508
rosa_multiflora	Rmu_co8238267.1_g000001 Rmu_sc0001601.1_g000013 Rmu_sc0012351.1_g000008
rosa_roxburghii	Rroxscaffold_6G00413710
rosa_rugosa	Rorug03G0086500 Rorug03G0086500
rosa_samantha	Rh3AG135200 Rh3BG156700 Rh3CG156500 Rh3DG157500
rosa_wichuraiana	Rw3G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	301, 304, 469
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	29, 50
AluI	AGCT	2 cut(s)	29, 50
Alw21I	GWGCWC	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	118, 200
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	71, 330, 338
AvaI	CYCGRG	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	2 cut(s)	105, 215
BcnI	CCSGG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	2 cut(s)	81, 453
BseCI	ATCGAT	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	64, 73
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	8 cut(s)	54, 348, 351, 354, 357, 360, 363, 366
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	120, 202
BshVI	ATCGAT	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	5 cut(s)	68, 82, 240, 412, 454
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	2 cut(s)	120, 202
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	139, 382
Bsp143I	GATC	2 cut(s)	61, 391
BspACI	CCGC	3 cut(s)	301, 304, 469
BspANI	GGCC	2 cut(s)	120, 202
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	287
BsrFI	RCCGGY	2 cut(s)	81, 453
BssAI	RCCGGY	2 cut(s)	81, 453
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	61, 391
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	64, 73
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	64, 394
BstMBI	GATC	2 cut(s)	61, 391
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	120, 202
BsuTUI	ATCGAT	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	64, 73
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	81, 453
ClaI	ATCGAT	1 cut(s)	394
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	233
CviJI	RGCY	7 cut(s)	29, 50, 104, 120, 202, 380, 420
CviKI_1	RGCY	7 cut(s)	29, 50, 104, 120, 202, 380, 420
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	63, 393
DpnII	GATC	2 cut(s)	61, 391
EaeI	YGGCCR	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	34
FaiI	YATR	5 cut(s)	205, 210, 247, 249, 251
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	51, 60
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	302
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	120, 202
HapII	CCGG	5 cut(s)	68, 82, 240, 412, 454
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	42, 93, 408
HpaII	CCGG	5 cut(s)	68, 82, 240, 412, 454
HphI	GGTGA	3 cut(s)	71, 330, 338
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	176, 424, 436
Hpy188III	TCNNGA	3 cut(s)	53, 125, 159
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	4 cut(s)	9, 12, 15, 153
HpyAV	CCTTC	2 cut(s)	275, 356
HpyF3I	CTNAG	1 cut(s)	381
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	61, 391
LmnI	GCTCC	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	63, 393
MboI	GATC	2 cut(s)	61, 391
MboII	GAAGA	2 cut(s)	234, 333
MhlI	GDGCHC	2 cut(s)	139, 382
MluCI	AATT	4 cut(s)	107, 257, 371, 387
MlyI	GAGTC	1 cut(s)	51
MspI	CCGG	5 cut(s)	68, 82, 240, 412, 454
MspR9I	CCNGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	287
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	61, 391
NmuCI	GTSAC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	10, 157
PfeI	GAWTC	2 cut(s)	93, 408
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	61, 391
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	139, 382
SetI	ASST	5 cut(s)	31, 52, 328, 367, 477
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	51, 99
SmoI	CTYRAG	2 cut(s)	51, 99
Sse9I	AATT	4 cut(s)	107, 257, 371, 387
SsiI	CCGC	3 cut(s)	301, 304, 469
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	2 cut(s)	52, 394
TasI	AATT	4 cut(s)	107, 257, 371, 387
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	93, 408
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	235, 420
XapI	RAATTY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.