Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

17386031 .. 17387179

Gene Structure 1149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAACACCGTTATCCAACCCACCTTCGCCGCCTTACCTCCTCCGCTCTCTCAGTACTACCCTCCAAAACCACCACCGCACTCCTCTCTTTCTCTCTCTCCCTCTAGACCCAAACCCAAAACCCCCCTCAACTTCTCCACCTCTCTCCCTACCCAATCCCTCCAACCCCTTTTCACCACTCCACACCCTCCCAATCCCAATGGCTCTCCCCAAACCCACTCTCTCTTCTCCCATCTCCTCCATCTGCTCCGCCTCTCTTCCCGCCACGCCGACCCCGAGCTCGCCAGGGCCGTCCACGCCTCCGTTCTCAAGCTCGAAAACGACACCCATCTCGGCAACGCTCTTGTTTCGGCTTATCTCAAGCTGGGTCTCGTTCCCGACGCTTACCAGGTCTTTCAGAGCCTCCCGTGCCCCAATGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGATGAGGCGGTGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGGGTCTGCAGGTTCATGCCTTGGCGGCTAAGATGGGTTACTTGGATTATGTTTTTGTTTCCAATGCCGTGATGGGTCTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCACAGAGACATTGCGTCTTGGAATACTGTTATGGCGAGTCTAGCGAATGAGTTTATGTATGATGAAGTGTTTGAATTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTAGCGGACTATATCACGCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCACGCCTATGCTGTCAAGACTGGTTTGGAGGGCAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCATGCGAGGGATGTTATTACTTGGACGGAGATGATTACTGCCTACATGGACTTCGGGTTGGTGGGGTTGGCTGTGGAGATGTTTTGCATCAGAACTATTATAGTATTGAACTATTATAGTTCAGAACTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

382

Amino Acids

41.95

Weight (kDa)

5.43

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	137 - 167	3.1e-08	PPR repeat
PPR_2	PF13041	138 - 186	1.3e-12	PPR repeat family
PPR_3	PF13812	138 - 185	9.2e-08	Pentatricopeptide repeat domain
PPR	PF01535	141 - 171	2.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	9 cut(s)	30, 44, 77, 250, 262, 432, 476, 602, 824
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	3 cut(s)	56, 527, 862
AfiI	CCNNNNNNNGG	2 cut(s)	418, 577
AflII	CTTAAG	1 cut(s)	689
AgsI	TTSAA	2 cut(s)	785, 1123
AhdI	GACNNNNNGTC	1 cut(s)	724
AjnI	CCWGG	2 cut(s)	284, 387
AluBI	AGCT	5 cut(s)	280, 313, 364, 484, 531
AluI	AGCT	5 cut(s)	280, 313, 364, 484, 531
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	374, 711
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	288, 460
ApeKI	GCWGC	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	288, 568
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	4 cut(s)	166, 421, 821, 980
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	982
BccI	CCATC	6 cut(s)	240, 249, 336, 604, 643, 806
BceAI	ACGGC	2 cut(s)	275, 629
BciT130I	CCWGG	2 cut(s)	286, 389
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	374, 711
BfaI	CTAG	2 cut(s)	105, 752
BfmI	CTRYAG	2 cut(s)	490, 584
BfrI	CTTAAG	1 cut(s)	689
BfuAI	ACCTGC	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	3 cut(s)	30, 603, 996
BlsI	GCNGC	3 cut(s)	31, 604, 997
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	3 cut(s)	286, 389, 464
Bme18I	GGWCC	1 cut(s)	568
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	288, 568
BmrFI	CCNGG	3 cut(s)	286, 389, 464
BmsI	GCATC	2 cut(s)	1002, 1110
BpuEI	CTTGAG	2 cut(s)	293, 344
BpuMI	CCSGG	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	285, 597
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 577
Bse1I	ACTGG	2 cut(s)	868, 922
Bse3DI	GCAATG	2 cut(s)	720, 952
BseBI	CCWGG	2 cut(s)	286, 389
BseDI	CCNNGG	2 cut(s)	285, 597
BseGI	GGATG	3 cut(s)	501, 1017, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	418, 577
BseMI	GCAATG	2 cut(s)	720, 952
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	868, 922
BseRI	GAGGAG	4 cut(s)	30, 73, 227, 514
BseSI	GKGCMC	1 cut(s)	413
BseX3I	CGGCCG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	982
BseYI	CCCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	290, 462
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	444, 459, 463
BslI	CCNNNNNNNGG	2 cut(s)	418, 577
BsmAI	GTCTC	2 cut(s)	374, 711
BsnI	GGCC	2 cut(s)	290, 462
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	282, 413
BspACI	CCGC	9 cut(s)	30, 44, 77, 250, 262, 432, 476, 602, 824
BspANI	GGCC	2 cut(s)	290, 462
BspCNI	CTCAG	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	588
BspMI	ACCTGC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	720, 952
BsrI	ACTGG	2 cut(s)	868, 922
BssECI	CCNNGG	2 cut(s)	285, 597
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	286, 389
Bst4CI	ACNGT	3 cut(s)	10, 739, 847
Bst6I	CTCTTC	2 cut(s)	230, 262
BstAFI	CTTAAG	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	282, 1017
BstDEI	CTNAG	2 cut(s)	51, 606
BstF5I	GGATG	3 cut(s)	501, 1017, 1030
BstHHI	GCGC	1 cut(s)	688
BstMAI	GTCTC	2 cut(s)	374, 711
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 408, 602, 752
BstNI	CCWGG	2 cut(s)	286, 389
BstNSI	RCATGY	1 cut(s)	1019
BstSCI	CCNGG	3 cut(s)	284, 387, 462
BstSFI	CTRYAG	2 cut(s)	490, 584
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	982
BstZI	CGGCCG	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	290, 462
BtsCI	GGATG	3 cut(s)	501, 1017, 1030
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	282, 1017
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	288, 568
CseI	GACGC	2 cut(s)	389, 714
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	55, 526, 861
CviAII	CATG	3 cut(s)	593, 1016, 1060
CviQI	GTAC	3 cut(s)	55, 526, 861
DdeI	CTNAG	2 cut(s)	51, 606
DriI	GACNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	460
EagI	CGGCCG	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	230, 262
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	2 cut(s)	230, 262
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	284, 387
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	1017
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	3 cut(s)	596, 1019, 1063
FatI	CATG	3 cut(s)	592, 1015, 1059
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	30, 603, 996
FokI	GGATG	3 cut(s)	508, 1024, 1037
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	30, 603, 996
FspBI	CTAG	2 cut(s)	105, 752
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	3 cut(s)	30, 603, 996
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	290, 462
HapII	CCGG	3 cut(s)	444, 459, 463
HgaI	GACGC	2 cut(s)	389, 714
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	3 cut(s)	596, 1019, 1063
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	444, 459, 463
HphI	GGTGA	4 cut(s)	166, 421, 821, 980
Hpy166II	GTNNAC	2 cut(s)	295, 898
Hpy188I	TCNGA	4 cut(s)	399, 561, 1106, 1138
Hpy188III	TCNNGA	4 cut(s)	105, 377, 913, 1006
Hpy8I	GTNNAC	2 cut(s)	295, 898
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	34, 878
HpyCH4III	ACNGT	3 cut(s)	10, 739, 847
HpyCH4V	TGCA	5 cut(s)	539, 586, 950, 1015, 1101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 408, 602, 752
HpyF3I	CTNAG	2 cut(s)	51, 606
Hsp92II	CATG	3 cut(s)	596, 1019, 1063
HspAI	GCGC	1 cut(s)	686
LmnI	GCTCC	2 cut(s)	252, 481
Lsp1109I	GCAGC	1 cut(s)	982
LweI	GCATC	2 cut(s)	1002, 1110
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	2 cut(s)	105, 752
MaeIII	GTNAC	1 cut(s)	614
MbiI	CCGCTC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	217, 249, 479
MhlI	GDGCHC	2 cut(s)	282, 413
MluCI	AATT	4 cut(s)	540, 575, 785, 931
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	2 cut(s)	40, 187
Mph1103I	ATGCAT	1 cut(s)	1017
MseI	TTAA	1 cut(s)	690
MslI	CAYNNNNRTG	1 cut(s)	903
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	3 cut(s)	444, 459, 463
MspR9I	CCNGG	3 cut(s)	286, 389, 464
MvaI	CCWGG	2 cut(s)	286, 389
MwoI	GCNNNNNNNGC	4 cut(s)	296, 408, 602, 752
NciI	CCSGG	1 cut(s)	464
NlaIII	CATG	3 cut(s)	596, 1019, 1063
NmeAIII	GCCGAG	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	1 cut(s)	1019
PaeI	GCATGC	1 cut(s)	1019
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 288
PkrI	GCNGC	3 cut(s)	31, 604, 997
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	284, 387
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	2 cut(s)	284, 387
PspPI	GGNCC	2 cut(s)	288, 568
PstI	CTGCAG	1 cut(s)	588
RsaI	GTAC	3 cut(s)	56, 527, 862
RsaNI	GTAC	3 cut(s)	55, 526, 861
RseI	CAYNNNNRTG	1 cut(s)	903
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	3 cut(s)	30, 603, 996
Sau96I	GGNCC	2 cut(s)	288, 568
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	3 cut(s)	286, 389, 464
SduI	GDGCHC	2 cut(s)	282, 413
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	1002, 1110
SfcI	CTRYAG	2 cut(s)	490, 584
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	903
SmlI	CTYRAG	3 cut(s)	308, 359, 689
SmoI	CTYRAG	3 cut(s)	308, 359, 689
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	4 cut(s)	540, 575, 785, 931
SsiI	CCGC	9 cut(s)	30, 44, 77, 250, 262, 432, 476, 602, 824
SspMI	CTAG	2 cut(s)	105, 752
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	284, 387, 462
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	10, 739, 847
TaqI	TCGA	4 cut(s)	315, 573, 842, 1005
TasI	AATT	4 cut(s)	540, 575, 785, 931
TatI	WGTACW	3 cut(s)	54, 525, 860
TauI	GCSGC	2 cut(s)	32, 605
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseI	GCWGC	1 cut(s)	995
TspDTI	ATGAA	4 cut(s)	17, 581, 717, 789
TspGWI	ACGGA	2 cut(s)	292, 1055
Vha464I	CTTAAG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	568
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XspI	CTAG	2 cut(s)	105, 752
ZrmI	AGTACT	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.