RchiOBHm_Chr3g0484431

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011615
Physical Location & Seq
Reverse (-)
30802103 .. 30803918
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGACAGGATGTGGATCTCCTTTACCAAAAGCACCACTTGATACTGGACTTGTTTGTAACTGGCTAGCTATAGAAGGTGTACAACCTGCAATTCCGGAAAATGCACCTATAGAAGGTTTGTCTCTTAAGCTTTCTCCATGCCAGCATCCTCACATACACATTGAACCTTATTTACTTGCCTTGTTGCAAAAAGATTGGGCAGACAACCATTGGGAACTTAGAGGCTTCACACCGAATCTGGTTGCTTCAATCTGCAAAAGGTGGATTATGCTAAGTTTGGGCATGTCTATAACACTCCAGTCACGACTAACAAAAACTTTGGTCAATGCATTTTTGGACCCAAAACGGAACTTGAGTCAACACTGTGGTGTAATTCAAAGTTTAGTTGCTATAGGGCACAGGGTGGTTAGCCTTCTGATACTATCAAATCTGGAGTCATATCTGCGATTTCTTGAACCAGAACTGCTTCTTGGTAAGCAAAAGAATGAGATAAAAGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

167

Amino Acids

18.56

Weight (kDa)

7.69

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF6_C PF07571 65 - 144 5.5e-14 TAF6 C-terminal HEAT repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 1 cut(s) 22
AdeI CACNNNGTG 1 cut(s) 403
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 164, 249, 377, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 2 cut(s) 68, 130
AluI AGCT 2 cut(s) 68, 130
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 22
Aor13HI TCCGGA 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 3 cut(s) 69, 108, 390
BfrI CTTAAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 1 cut(s) 154
BmtI GCTAGC 1 cut(s) 68
BpmI CTGGAG 2 cut(s) 281, 452
BpuEI CTTGAG 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 49, 65, 298
Bse8I GATNNNNATC 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 2 cut(s) 14, 145
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 49, 65, 298
BseSI GKGCMC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 1 cut(s) 14
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 339
BspMI ACCTGC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 22
BspTI CTTAAG 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 3 cut(s) 49, 65, 298
BssMI GATC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 365
BstAFI CTTAAG 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 66, 143
BstDEI CTNAG 2 cut(s) 218, 272
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 14, 145
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 286
BstSFI CTRYAG 3 cut(s) 69, 108, 390
BstSLI GKGCMC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BtsCI GGATG 2 cut(s) 14, 145
BtsIMutI CAGTG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 66, 143
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 138, 283, 501
CviJI RGCY 5 cut(s) 64, 68, 130, 225, 411
CviKI_1 RGCY 5 cut(s) 64, 68, 130, 225, 411
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 218, 272
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DraIII CACNNNGTG 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 3 cut(s) 141, 286, 504
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FatI CATG 3 cut(s) 137, 282, 500
FokI GGATG 2 cut(s) 21, 132
FspBI CTAG 1 cut(s) 65
GsuI CTGGAG 2 cut(s) 281, 452
HapII CCGG 1 cut(s) 95
Hin1II CATG 3 cut(s) 141, 286, 504
HincII GTYRAC 1 cut(s) 359
HindII GTYRAC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 235, 355, 434
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 80, 359
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 4 cut(s) 95, 303, 431, 452
Hpy8I GTNNAC 2 cut(s) 80, 359
HpyAV CCTTC 3 cut(s) 68, 107, 422
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 5 cut(s) 89, 104, 187, 255, 329
HpyF3I CTNAG 2 cut(s) 218, 272
Hsp92II CATG 3 cut(s) 141, 286, 504
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 14
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 56, 300
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 90, 372
MlyI GAGTC 2 cut(s) 364, 443
MnlI CCTC 3 cut(s) 159, 215, 490
Mph1103I ATGCAT 1 cut(s) 331
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 1 cut(s) 95
NdeII GATC 1 cut(s) 14
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 141, 286, 504
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 300
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 235
PleI GAGTC 2 cut(s) 363, 442
PpsI GAGTC 2 cut(s) 363, 442
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 337
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 2 cut(s) 364, 443
SduI GDGCHC 1 cut(s) 399
SetI ASST 8 cut(s) 70, 79, 88, 109, 118, 132, 169, 263
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 3 cut(s) 69, 108, 390
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 125, 352
SmoI CTYRAG 2 cut(s) 125, 352
Sse9I AATT 2 cut(s) 90, 372
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 365
TasI AATT 2 cut(s) 90, 372
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 337
XagI CCTNNNNNAGG 1 cut(s) 111
XceI RCATGY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.