Rorug02G0435500

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011615
Physical Location & Seq
Forward (+)
55630560 .. 55631392
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0435500.1

Sequence Viewer

Length: 654 bp
ATGGATCTGCAGAGTTTCAGCTCATTTAGAGTTTATTTGGTCAGGCGGCCGCTCCTTCTGTTTAGCTCGGTTTCTCCTAGCCGAACTGTGTTGTTAAGGAATTGCCTAAAATGGCGTGTTGGTGATGGCAGATCAATTAAATTTTGGCTTGATCAATGGCTTCTTACTACTCCCCTCATCAGCTTGGCTCTTCCTACTGCTGACATTAACATCAATGCAACCATCAATGATTTCTGGACTGTTGATGGTTGGAACTTGAATCTTCTCTCCTCCATGGTCCCAGGTGATATTGTTAATCAAATTATTAATACTCCTACTGGTTTTGATAATTGTGGTTGTGACTCTTTAATTTGGGGAGCTACTTCTAATGGTTGCTTCACTGTCAAGTCCGCCTACAACTCTAAATTTGATTTTCCTAACCTTCAAAATCCTCAATGGACTGTTGTGTGGAAAAGCAATGTTCCTCCTAAGTTGAAAACTTTCCTTTGGGCTGCTCTCCATAGAAAGCTTCTGACTAATGTTCAAAGAGCTAGGAGAGGGTTTTCCTCCACCTCCTCATGTCCTATTTGTAAGGTTGCTGATGAAACTCTTCTTCACTTGTTCAGGGACTGTCCTAGATCTCTTGCTATATGGAAGGCCTTTCTTAAGCCATGA

Protein Analysis

217

Amino Acids

24.63

Weight (kDa)

9.67

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 126 - 211 2.1e-21 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 52
AciI CCGC 3 cut(s) 46, 50, 390
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 140, 404
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 4 cut(s) 259, 425, 475, 524
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 6 cut(s) 21, 66, 183, 359, 508, 530
AluI AGCT 6 cut(s) 21, 66, 183, 359, 508, 530
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 609
AoxI GGCC 2 cut(s) 47, 636
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 2 cut(s) 140, 404
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 2 cut(s) 479, 588
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 134, 296
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 119, 230, 239
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 1 cut(s) 151
BfaI CTAG 3 cut(s) 78, 531, 615
BfmI CTRYAG 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 644
BglII AGATCT 1 cut(s) 617
BisI GCNGC 3 cut(s) 47, 50, 492
BlsI GCNGC 3 cut(s) 48, 51, 493
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 273, 280
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 273, 280
BseMI GCAATG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 2 cut(s) 259, 544
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 49, 638
BsiEI CGRYCG 1 cut(s) 50
BslFI GGGAC 2 cut(s) 263, 620
BsmFI GGGAC 2 cut(s) 263, 620
BsnI GGCC 2 cut(s) 49, 638
Bsp143I GATC 4 cut(s) 4, 131, 151, 617
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 46, 50, 390
BspANI GGCC 2 cut(s) 49, 638
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 273, 280
BssMI GATC 4 cut(s) 4, 131, 151, 617
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 5 cut(s) 88, 241, 382, 442, 611
Bst6I CTCTTC 2 cut(s) 195, 594
BstAFI CTTAAG 1 cut(s) 644
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 4 cut(s) 7, 134, 154, 620
BstMBI GATC 4 cut(s) 4, 131, 151, 617
BstMCI CGRYCG 1 cut(s) 50
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 4, 617
BstYI RGATCY 2 cut(s) 4, 617
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 638
BtgI CCRYGG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 609
CciNI GCGGCCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 3 cut(s) 274, 558, 651
DdeI CTNAG 1 cut(s) 468
DpnI GATC 4 cut(s) 6, 133, 153, 619
DpnII GATC 4 cut(s) 4, 131, 151, 617
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 195, 594
EarI CTCTTC 2 cut(s) 195, 594
EciI GGCGGA 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 277
Eco52I CGGCCG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 277, 561, 654
FaiI YATR 6 cut(s) 275, 501, 559, 629, 631, 652
FaqI GGGAC 2 cut(s) 263, 620
FatI CATG 3 cut(s) 273, 557, 650
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 47, 50, 492
Fsp4HI GCNGC 3 cut(s) 47, 50, 492
FspBI CTAG 3 cut(s) 78, 531, 615
GluI GCNGC 3 cut(s) 47, 50, 492
HaeIII GGCC 2 cut(s) 49, 638
Hin1II CATG 3 cut(s) 277, 561, 654
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 259, 341
HphI GGTGA 2 cut(s) 134, 296
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 65, 431, 628
HpyCH4III ACNGT 5 cut(s) 88, 241, 382, 442, 611
HpyCH4V TGCA 2 cut(s) 10, 218
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 3 cut(s) 277, 561, 654
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 4 cut(s) 4, 131, 151, 617
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 2 cut(s) 57, 356
LpnPI CCDG 6 cut(s) 28, 220, 267, 294, 303, 589
Lsp1109I GCAGC 1 cut(s) 478
MaeI CTAG 3 cut(s) 78, 531, 615
MaeIII GTNAC 1 cut(s) 338
MalI GATC 4 cut(s) 6, 133, 153, 619
MbiI CCGCTC 1 cut(s) 52
MboI GATC 4 cut(s) 4, 131, 151, 617
MboII GAAGA 4 cut(s) 182, 254, 581, 584
MflI RGATCY 2 cut(s) 4, 617
MluCI AATT 7 cut(s) 100, 135, 140, 300, 328, 348, 404
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 8 cut(s) 185, 280, 441, 474, 530, 556, 562, 565
MroXI GAANNNNTTC 2 cut(s) 479, 588
MseI TTAA 7 cut(s) 95, 138, 207, 294, 306, 347, 645
MspCI CTTAAG 1 cut(s) 644
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
NcoI CCATGG 1 cut(s) 273
NdeII GATC 4 cut(s) 4, 131, 151, 617
NlaIII CATG 3 cut(s) 277, 561, 654
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 338
NotI GCGGCCGC 1 cut(s) 47
PceI AGGCCT 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 195
PdmI GAANNNNTTC 2 cut(s) 479, 588
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 48, 51, 493
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 2 cut(s) 4, 617
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 7 cut(s) 95, 138, 207, 294, 306, 347, 645
SatI GCNGC 3 cut(s) 47, 50, 492
Sau3AI GATC 4 cut(s) 4, 131, 151, 617
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 7 cut(s) 100, 135, 140, 300, 328, 348, 404
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 3 cut(s) 46, 50, 390
SspMI CTAG 3 cut(s) 78, 531, 615
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 88, 241, 382, 442, 611
TasI AATT 7 cut(s) 100, 135, 140, 300, 328, 348, 404
TauI GCSGC 2 cut(s) 49, 52
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 7 cut(s) 95, 138, 207, 294, 306, 347, 645
Tru9I TTAA 7 cut(s) 95, 138, 207, 294, 306, 347, 645
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 1 cut(s) 385
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 2 cut(s) 140, 404
XmnI GAANNNNTTC 2 cut(s) 479, 588
XspI CTAG 3 cut(s) 78, 531, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.