Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011615

Physical Location & Seq

Genomic Coordinates Reverse (-)

28998079 .. 29009705

Gene Structure 11627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGATCTCTCGCACACCGATCAACATCTCATTCTTGTGGTTCTCTCTTCCATCGTTCTCTTTACCGTTCTAAGCAGCCATGGCCACCGCTGCGTTGCTCCGATCTCTACGACGTCATGACCTCGCTTCAGCCCCTCTGTTCCTACTGCTTGCCGAAGTACCGATCTGTAAAGCCACTTTCAGTTAGCTATGGACTTGGCATGTCAGATCATGATAGCGAGGGGCGGATTGTAACAGTAGAGTTTGATTCATTTTACCTGATAAGTGGATATGTTCCTAATTCTGGAGATGGTTTGAGGAGACTGACATACAGGATTACAGAATGGGATCCATCTCTCAGTAATTACATGAAAGTAAGTATGGTTTTAATTGCTTTACCTCTTGAAGGAAATAGAAGAAGTGCTGGGTTTACAGATGAAGAACGGCAATCCTTCGGGACAAACTTTTTATCCAGAGGATTTGTGGATACATTTAGAAGGCAACACCCTGGTATTGTTGGCTATACTTACTGGGGCTATCGACATGGTGGACGCAAATTTAACAGAGGGTGGCGGCTTGACTACTTCCTAGTCTCAGAATCTGTAGCTGACAAGGTGATCGAAGCTCCTTTACCAAAAGCACCACTTGATACTGGACTTGTTTGTAACTGGCTAGCTATAGAAGGTGTACAACCTGCAATTCCGGAAAATGCACCTATAGAAGGTTTGTCTCTTAAGCTTTCTCCATGCCAGCATCCTCACATACACATTGAACCTTATTTACTTGCCTTGTTGCAAAAAGATTGGGCAGACAACCATTGGGAACTTAGAGGCTTCACACCGAATCTGGTTGCTTCAATCTGCAAAAGGTTAGGGTTGCTTCGTTTGGGCATGTCTATAACACTCCAGTCACGACTAACAAAAACTTTGGTCAATGCATTTTTGGACCCAAAACGGAACTTGAGTCAACACTGTGGTGTAATTCAAAGTTTAGTTGCTATAGGGCACAGGGTGGTTAGCCTTCTGATACTATCAAATCTGGAGTCATATCTGCGATTTCTTGAACCAGAACTGCTTCTTGGTAAGCAAAAGAATGAGATAAAAGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004528 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006289 GO:0006355 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0033683 GO:0034641 GO:0042578 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos SAP

Protein Analysis

363

Amino Acids

41.15

Weight (kDa)

9.11

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF6_C	PF07571	261 - 340	2.5e-13	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0484431 RchiOBHm_Chr3g0484451 RchiOBHm_Chr3g0484521 RchiOBHm_Chr6g0264571 RchiOBHm_Chr7g0234091 RchiOBHm_Chr7g0234101
rosa_laevigata	RLG00000019653
rosa_roxburghii	Rroxscaffold_6G00397740
rosa_rugosa	Rorug02G0435500 Rorug04G0434900
rosa_samantha	Rh2BG509000 Rh2DG520800 Rh3AG260700 Rh3AG261300 Rh4AG296000 Rh4BG302500 Rh5DG374700 Rh7AG410800 Rh7AG468600
rosa_wichuraiana	Rw3G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	3 cut(s)	89, 226, 553
AclWI	GGATC	2 cut(s)	323, 336
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	2 cut(s)	161, 669
AfiI	CCNNNNNNNGG	3 cut(s)	284, 386, 701
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	5 cut(s)	386, 752, 837, 965, 1043
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AleI	CACNNNNGTG	1 cut(s)	954
AluBI	AGCT	5 cut(s)	189, 587, 605, 656, 718
AluI	AGCT	5 cut(s)	189, 587, 605, 656, 718
Alw26I	GTCTC	3 cut(s)	295, 577, 714
AlwI	GGATC	2 cut(s)	323, 336
AlwNI	CAGNNNCTG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	76, 91
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspS9I	GGNCC	1 cut(s)	925
AsuHPI	GGTGA	1 cut(s)	607
AsuNHI	GCTAGC	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	925
BaeGI	GKGCMC	1 cut(s)	987
BalI	TGGCCA	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbvI	GCAGC	2 cut(s)	78, 88
BccI	CCATC	3 cut(s)	60, 284, 340
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	460
BcoDI	GTCTC	3 cut(s)	295, 577, 714
BfaI	CTAG	2 cut(s)	569, 653
BfmI	CTRYAG	4 cut(s)	582, 657, 696, 978
BfrI	CTTAAG	1 cut(s)	713
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	3 cut(s)	77, 92, 554
BlsI	GCNGC	3 cut(s)	78, 93, 555
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	925
BmgT120I	GGNCC	1 cut(s)	925
BmiI	GGNNCC	2 cut(s)	330, 927
BmrFI	CCNGG	1 cut(s)	489
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	520
BpmI	CTGGAG	3 cut(s)	306, 869, 1040
BpuEI	CTTGAG	1 cut(s)	961
BsaBI	GATNNNNATC	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	80, 487
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 386, 701
Bse1I	ACTGG	4 cut(s)	515, 637, 653, 886
Bse8I	GATNNNNATC	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	80, 487
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	284, 386, 701
BseMII	CTCAG	2 cut(s)	352, 588
BseNI	ACTGG	4 cut(s)	515, 637, 653, 886
BseRI	GAGGAG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	987
BseXI	GCAGC	2 cut(s)	78, 88
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	3 cut(s)	284, 386, 701
BsmAI	GTCTC	3 cut(s)	295, 577, 714
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	667
Bsp143I	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	3 cut(s)	89, 226, 553
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	351, 587
BspEI	TCCGGA	1 cut(s)	682
BspHI	TCATGA	2 cut(s)	117, 211
BspLI	GGNNCC	2 cut(s)	330, 927
BspMI	ACCTGC	1 cut(s)	682
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	323, 336
BspTI	CTTAAG	1 cut(s)	713
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	4 cut(s)	515, 637, 653, 886
BssECI	CCNNGG	2 cut(s)	80, 487
BssMI	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	68, 238, 953
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	667
BstC8I	GCNNGC	3 cut(s)	152, 654, 731
BstDEI	CTNAG	4 cut(s)	72, 338, 574, 806
BstDSI	CCRYGG	1 cut(s)	80
BstENI	CCTNNNNNAGG	2 cut(s)	384, 699
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	7 cut(s)	8, 23, 106, 167, 211, 331, 600
BstMAI	GTCTC	3 cut(s)	295, 577, 714
BstMBI	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 91
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	2 cut(s)	205, 874
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	4 cut(s)	582, 657, 696, 978
BstSLI	GKGCMC	1 cut(s)	987
BstV1I	GCAGC	2 cut(s)	78, 88
BstX2I	RGATCY	2 cut(s)	5, 328
BstYI	RGATCY	2 cut(s)	5, 328
BsuI	GTATCC	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	949
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	3 cut(s)	152, 654, 731
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	2 cut(s)	117, 211
Cfr13I	GGNCC	1 cut(s)	925
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	160, 668
CviAII	CATG	9 cut(s)	81, 118, 202, 212, 349, 524, 726, 871, 1089
CviQI	GTAC	2 cut(s)	160, 668
DdeI	CTNAG	4 cut(s)	72, 338, 574, 806
DpnI	GATC	7 cut(s)	7, 22, 105, 166, 210, 330, 599
DpnII	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
DraIII	CACNNNGTG	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	925
Eco57I	CTGAAG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	2 cut(s)	384, 699
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	9 cut(s)	84, 121, 205, 215, 352, 527, 729, 874, 1092
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	9 cut(s)	80, 117, 201, 211, 348, 523, 725, 870, 1088
Fnu4HI	GCNGC	3 cut(s)	77, 92, 554
FokI	GGATG	1 cut(s)	720
Fsp4HI	GCNGC	3 cut(s)	77, 92, 554
FspBI	CTAG	2 cut(s)	569, 653
GluI	GCNGC	3 cut(s)	77, 92, 554
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	3 cut(s)	306, 869, 1040
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	9 cut(s)	84, 121, 205, 215, 352, 527, 729, 874, 1092
HincII	GTYRAC	1 cut(s)	947
HindII	GTYRAC	1 cut(s)	947
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	5 cut(s)	248, 578, 823, 943, 1022
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	4 cut(s)	411, 530, 668, 947
Hpy188I	TCNGA	4 cut(s)	103, 208, 577, 1005
Hpy8I	GTNNAC	4 cut(s)	411, 530, 668, 947
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	6 cut(s)	380, 442, 471, 656, 695, 1010
HpyCH4III	ACNGT	3 cut(s)	68, 238, 953
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	677, 692, 775, 843, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 91
HpyF3I	CTNAG	4 cut(s)	72, 338, 574, 806
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	9 cut(s)	84, 121, 205, 215, 352, 527, 729, 874, 1092
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
LmnI	GCTCC	2 cut(s)	104, 610
Lsp1109I	GCAGC	2 cut(s)	78, 88
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	2 cut(s)	569, 653
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	232, 644, 888
MalI	GATC	7 cut(s)	7, 22, 105, 166, 210, 330, 599
MboI	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
MboII	GAAGA	3 cut(s)	40, 408, 431
MflI	RGATCY	2 cut(s)	5, 328
MhlI	GDGCHC	1 cut(s)	987
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	6 cut(s)	280, 343, 369, 536, 678, 960
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	952, 1031
Mox20I	TGGCCA	1 cut(s)	85
Mph1103I	ATGCAT	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	1053
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	3 cut(s)	368, 540, 714
MslI	CAYNNNNRTG	2 cut(s)	36, 954
Msp20I	TGGCCA	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	91
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	82, 91
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	9 cut(s)	84, 121, 205, 215, 352, 527, 729, 874, 1092
NlaIV	GGNNCC	2 cut(s)	330, 927
NmuCI	GTSAC	1 cut(s)	888
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	2 cut(s)	205, 874
OliI	CACNNNNGTG	1 cut(s)	954
PagI	TCATGA	2 cut(s)	117, 211
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	3 cut(s)	248, 578, 823
PkrI	GCNGC	3 cut(s)	78, 93, 555
PleI	GAGTC	2 cut(s)	951, 1030
PpsI	GAGTC	2 cut(s)	951, 1030
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	330, 927
PspPI	GGNCC	1 cut(s)	925
PsrI	GAACNNNNNNTAC	2 cut(s)	744, 776
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	5, 328
RsaI	GTAC	2 cut(s)	161, 669
RsaNI	GTAC	2 cut(s)	160, 668
RseI	CAYNNNNRTG	2 cut(s)	36, 954
SaqAI	TTAA	3 cut(s)	368, 540, 714
SatI	GCNGC	3 cut(s)	77, 92, 554
Sau3AI	GATC	7 cut(s)	5, 20, 103, 164, 208, 328, 597
Sau96I	GGNCC	1 cut(s)	925
SchI	GAGTC	2 cut(s)	952, 1031
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	4 cut(s)	582, 657, 696, 978
SinI	GGWCC	1 cut(s)	925
SmiMI	CAYNNNNRTG	2 cut(s)	36, 954
SmlI	CTYRAG	2 cut(s)	713, 940
SmoI	CTYRAG	2 cut(s)	713, 940
Sse9I	AATT	6 cut(s)	280, 343, 369, 536, 678, 960
SsiI	CCGC	3 cut(s)	89, 226, 553
SspMI	CTAG	2 cut(s)	569, 653
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	68, 238, 953
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	520, 600
TasI	AATT	6 cut(s)	280, 343, 369, 536, 678, 960
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	3 cut(s)	248, 578, 823
Tru1I	TTAA	3 cut(s)	368, 540, 714
Tru9I	TTAA	3 cut(s)	368, 540, 714
TscAI	CASTG	1 cut(s)	956
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	2 cut(s)	76, 91
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	3 cut(s)	240, 365, 432
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	1 cut(s)	956
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	925
XagI	CCTNNNNNAGG	2 cut(s)	384, 699
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	2 cut(s)	205, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	2 cut(s)	569, 653
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.