RLG00000019653

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011615
Physical Location & Seq
Reverse (-)
55004311 .. 55008039
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019653

Sequence Viewer

Length: 318 bp
ATGAATCGGCTTTCAAAGAAGCCATTCTCGATGGTGGCTACGAGTGGTAGCAGTGGCGAGAGGGACACAATGGGGCCGGACTTGGAGAAATGGCTAGGGTTTCCAATTGCCAAATTCCGTCGGGCGAATTTGGAATTAGGAAATGGAATCGATATGGGTGATGTCATGGTATTTGAGTTACCAAGCCTGGGACCTTACACAATAATCTGTGGCTCTGCAGCCTGTGGAGTTGATGTGCGAAGGGGATCGATTTGTGTACCCAGCAAGAGAATGAGATGCTATCAAAACATGAAGTACTTACAAAGCAAGCTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

9.42

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 113, 127
AfaI GTAC 2 cut(s) 258, 296
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 113, 127
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 74, 191
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 188
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 74, 191
BmiI GGNNCC 2 cut(s) 75, 192
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 266
Bsa29I ATCGAT 2 cut(s) 150, 248
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 2 cut(s) 150, 248
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 76
BshVI ATCGAT 2 cut(s) 150, 248
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 2 cut(s) 77, 204
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 77, 204
BsnI GGCC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 245
BspANI GGCC 1 cut(s) 76
BspDI ATCGAT 2 cut(s) 150, 248
BspLI GGNNCC 2 cut(s) 75, 192
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 230
Bsu15I ATCGAT 2 cut(s) 150, 248
BsuRI GGCC 1 cut(s) 76
BsuTUI ATCGAT 2 cut(s) 150, 248
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 74, 191
ClaI ATCGAT 2 cut(s) 150, 248
Csp6I GTAC 2 cut(s) 257, 295
CviAII CATG 2 cut(s) 166, 289
CviJI RGCY 9 cut(s) 10, 22, 38, 76, 94, 186, 213, 221, 310
CviKI_1 RGCY 9 cut(s) 10, 22, 38, 76, 94, 186, 213, 221, 310
CviQI GTAC 2 cut(s) 257, 295
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 169, 292
FaiI YATR 4 cut(s) 155, 167, 290, 316
FaqI GGGAC 2 cut(s) 77, 204
FatI CATG 2 cut(s) 165, 288
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 169, 292
HinfI GANTC 2 cut(s) 4, 147
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 218
Hsp92II CATG 2 cut(s) 169, 292
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 90, 173, 200, 235, 274, 296
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 266
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 177
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MfeI CAATTG 1 cut(s) 105
MluCI AATT 4 cut(s) 105, 113, 127, 134
MnlI CCTC 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 23
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 188
NdeII GATC 1 cut(s) 245
NlaIII CATG 2 cut(s) 169, 292
NlaIV GGNNCC 2 cut(s) 75, 192
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 4, 147
PkrI GCNGC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 75, 192
PspPI GGNCC 2 cut(s) 74, 191
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 220
RsaI GTAC 2 cut(s) 258, 296
RsaNI GTAC 2 cut(s) 257, 295
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 2 cut(s) 74, 191
ScaI AGTACT 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 188
SetI ASST 2 cut(s) 196, 312
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 191
Sse9I AATT 4 cut(s) 105, 113, 127, 134
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 186
TaqI TCGA 3 cut(s) 29, 150, 248
TasI AATT 4 cut(s) 105, 113, 127, 134
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 2 cut(s) 4, 147
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 17, 305
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 113, 127
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.