Rh5DG374700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011615
Physical Location & Seq
Reverse (-)
56976603 .. 56977896
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG374700.1

Sequence Viewer

Length: 318 bp
ATGTCATGGTATTTGAGTTACGAAGCCTGGGACCTTGCACAATGTTCAGTGGCTCTGCAGGTCTTGATGCCCAGTACTCTAGTAGAATATATCTACTCCATGCAAACCAATGAATCTAGATATTGTACATGTTTGTTTGGTTTTGAGGAGGAGGTTAAGAGCTCATACTGCAATGGGGTTTTTCTAAAACAATCGAACTTCAAGATTGAAAATTCATTTATGATGCTTTTCAGCCTGTGGAGTTCATGTGCAAAAGGGATCAATTTCTGTACCCAGCAAGAGACTGAGATTGCTGTACCGTATTACCAAAACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.29

Weight (kDa)

4.43

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 211
AfaI GTAC 4 cut(s) 76, 127, 271, 297
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 202, 209
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 2 cut(s) 80, 117
BfmI CTRYAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 57, 213
BmuI ACTGGG 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 161, 164
BseYI CCCAGC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 285
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 75, 126, 270, 296
CviAII CATG 4 cut(s) 6, 100, 129, 246
CviJI RGCY 4 cut(s) 26, 53, 162, 234
CviKI_1 RGCY 4 cut(s) 26, 53, 162, 234
CviQI GTAC 4 cut(s) 75, 126, 270, 296
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 4 cut(s) 9, 103, 132, 249
FaiI YATR 7 cut(s) 7, 90, 101, 130, 166, 221, 247
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 5, 99, 128, 245
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 2 cut(s) 80, 117
GsaI CCCAGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 9, 103, 132, 249
HinfI GANTC 1 cut(s) 113
Hpy188III TCNNGA 3 cut(s) 64, 117, 202
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 5 cut(s) 38, 58, 103, 171, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 4 cut(s) 9, 103, 132, 249
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 13, 40, 44, 85, 248, 287
LweI GCATC 2 cut(s) 57, 213
MaeI CTAG 2 cut(s) 80, 117
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 211, 262
MnlI CCTC 3 cut(s) 139, 142, 145
MseI TTAA 2 cut(s) 156, 316
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 1 cut(s) 258
NlaIII CATG 4 cut(s) 9, 103, 132, 249
NlaIV GGNNCC 1 cut(s) 32
NspI RCATGY 1 cut(s) 132
PciI ACATGT 1 cut(s) 128
PfeI GAWTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 31
PscI ACATGT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 4 cut(s) 76, 127, 271, 297
RsaNI GTAC 4 cut(s) 75, 126, 270, 296
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 156, 316
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 36, 63, 156, 164
SfaNI GCATC 2 cut(s) 57, 213
SfcI CTRYAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 31
Sse9I AATT 2 cut(s) 211, 262
SspMI CTAG 2 cut(s) 80, 117
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 211, 262
TatI WGTACW 2 cut(s) 74, 125
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 156, 316
Tru9I TTAA 2 cut(s) 156, 316
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 126, 204, 234
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 211
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 132
XspI CTAG 2 cut(s) 80, 117
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.