Rroxscaffold_6G00397740

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011615
Physical Location & Seq
Forward (+)
19429644 .. 19431802
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397740.1

Sequence Viewer

Length: 468 bp
ATGGATTTTAAAGATGTGATCCAAGCTCCTTTACCAAAAGCACCACTTGATACTGGACTTGTTTGTCACTGGCTAGCTATAGAAGGTGTACAACCTGCAATTCCGGAAAATGCACCTATAGAAGCTACACCAATTTCTGCCATCTGTAGTTACTTGCCTTGTTGCAAAAAGATTGGGCAGACAACCATTGGGAACTTAGAGGCTTCACACCGAATCTGGTTGCTTCAATCTGCAAAAGGTTTGGGCTTGTCTATAACACTCCAGTCACGACTTACAAAAACTTTGGTCAATGCATTTTTGGACCCAAAACGGAACTTGAATCAACACTGTGGTGTAATTCAAAGTTTAGCTGCTATAGGGCACAGGGTGGTTAGCCTTCTGATACTATCAAATCTGGAGTCATATCTGCGATTTCTTGAACCAGAACTGCTTCTTGGTAAGCAAAAGAATGAGATAAAAGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

155

Amino Acids

16.96

Weight (kDa)

8.3

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF6_C PF07571 86 - 132 8.2e-09 TAF6 C-terminal HEAT repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 103
AclWI GGATC 1 cut(s) 13
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 1 cut(s) 90
AgsI TTSAA 4 cut(s) 227, 319, 341, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 4 cut(s) 26, 77, 125, 350
AluI AGCT 4 cut(s) 26, 77, 125, 350
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 301
AsuNHI GCTAGC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 149
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 4 cut(s) 78, 117, 145, 354
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 303
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 245, 416
BsaWI WCCGGW 1 cut(s) 103
Bse1I ACTGG 3 cut(s) 58, 74, 262
BseAI TCCGGA 1 cut(s) 103
BseNI ACTGG 3 cut(s) 58, 74, 262
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 3 cut(s) 58, 74, 262
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 196
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstSFI CTRYAG 4 cut(s) 78, 117, 145, 354
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 67, 325
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 465
CviJI RGCY 8 cut(s) 26, 73, 77, 125, 203, 246, 350, 375
CviKI_1 RGCY 8 cut(s) 26, 73, 77, 125, 203, 246, 350, 375
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 196
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraI TTTAAA 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 367
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 295
FaeI CATG 1 cut(s) 468
FaiI YATR 6 cut(s) 80, 119, 254, 356, 403, 466
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 1 cut(s) 464
Fnu4HI GCNGC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 351
GsuI CTGGAG 2 cut(s) 245, 416
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 468
HinfI GANTC 3 cut(s) 213, 319, 398
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 4 cut(s) 104, 267, 395, 416
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 77, 386
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 5 cut(s) 98, 113, 165, 233, 293
HpyF3I CTNAG 1 cut(s) 196
Hsp92II CATG 1 cut(s) 468
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 9 cut(s) 39, 55, 108, 117, 202, 275, 349, 380, 435
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 65, 149, 264
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 99, 132, 336
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 2 cut(s) 193, 454
Mph1103I ATGCAT 1 cut(s) 295
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 1 cut(s) 104
NdeII GATC 1 cut(s) 18
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 468
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 65, 264
NsiI ATGCAT 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 2 cut(s) 213, 319
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 301
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 407
SduI GDGCHC 1 cut(s) 363
SetI ASST 8 cut(s) 28, 79, 88, 97, 118, 127, 241, 352
SfcI CTRYAG 4 cut(s) 78, 117, 145, 354
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 3 cut(s) 99, 132, 336
SspMI CTAG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 329
TasI AATT 3 cut(s) 99, 132, 336
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 2 cut(s) 213, 319
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 74, 332
TseFI GTSAC 2 cut(s) 65, 264
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 65, 264
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 74, 332
VpaK11BI GGWCC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.