RchiOBHm_Chr3g0484521

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011615
Physical Location & Seq
Reverse (-)
30869216 .. 30871023
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44923

Sequence Viewer

Length: 525 bp
ATGGATTCTAAAGATGTGATCGAAGCTCCTTTACCAAAAGCACCACTTGATACTGGACTTGTTTGTCACTGGCTTGCTATAGAAGGTGTACAACCTGCAATTCCGGAAAATGCACCTATAGAAGGTTTGTCTCTTAAGCTTTCTCCATGCCAGCATCCTCACATACACATTGAACCTTATTTACTTGCCTTGTTGCAAAAAGATTGGGCAGACAACCATTGGGAACTTAGAGGCTTCACACCGAATCTAGTTGCTTCAATCTCCAAAAGGTGGATTATGCTAAGTTCATATATTCACTTTGTTTGGGCAATAACACTCCAGTCACGACTTACAAAAACTTTGGTCAATGGATTTTTGGACCCAAAACGGAACTTGAAGCAACACTGTGGTGTAATTCAAAGTTTAGCTGCTATAGGCCACAGGGTGGTTAGCCTTCTGATACTATCAAATCTGGAGTCATATCTGCGATTTCTTGAACCAGAACTGCTTCTTGGTAAGCAAAAGAATGAGATAAAAGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

174

Amino Acids

19.63

Weight (kDa)

7.09

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF6_C PF07571 68 - 151 1e-11 TAF6 C-terminal HEAT repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 2 cut(s) 270, 424
AccIII TCCGGA 1 cut(s) 103
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 122, 270, 424
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 5 cut(s) 173, 258, 376, 398, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 3 cut(s) 26, 139, 407
AluI AGCT 3 cut(s) 26, 139, 407
Alw26I GTCTC 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 407
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 358
AvaII GGWCC 1 cut(s) 358
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbvI GCAGC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 3 cut(s) 78, 117, 411
BfrI CTTAAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 1 cut(s) 163
BpmI CTGGAG 2 cut(s) 302, 473
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 270, 424
Bse1I ACTGG 3 cut(s) 58, 74, 319
BseAI TCCGGA 1 cut(s) 103
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 122, 270, 424
BseNI ACTGG 3 cut(s) 58, 74, 319
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 122, 270, 424
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 417
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 18
BspANI GGCC 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 3 cut(s) 58, 74, 319
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 75, 152
BstDEI CTNAG 2 cut(s) 227, 281
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 18
BstSFI CTRYAG 3 cut(s) 78, 117, 411
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 67, 382
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 75, 152
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 89
CviAII CATG 2 cut(s) 147, 522
CviJI RGCY 7 cut(s) 26, 73, 139, 234, 407, 417, 432
CviKI_1 RGCY 7 cut(s) 26, 73, 139, 234, 407, 417, 432
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 227, 281
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 424
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 358
EcoNI CCTNNNNNAGG 1 cut(s) 120
FaeI CATG 2 cut(s) 150, 525
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 146, 521
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 408
GsuI CTGGAG 2 cut(s) 302, 473
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 104
Hin1II CATG 2 cut(s) 150, 525
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 5, 244, 455
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 4 cut(s) 104, 324, 452, 473
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 77, 116, 443
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 98, 113, 196
HpyF3I CTNAG 2 cut(s) 227, 281
Hsp92II CATG 2 cut(s) 150, 525
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 9 cut(s) 39, 55, 108, 117, 164, 332, 406, 437, 492
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 65, 321
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MluCI AATT 2 cut(s) 99, 393
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 3 cut(s) 168, 224, 511
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 387
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 104
NdeII GATC 1 cut(s) 18
NlaIII CATG 2 cut(s) 150, 525
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 65, 321
OliI CACNNNNGTG 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 5, 244
PflMI CCANNNNNTGG 2 cut(s) 270, 424
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 358
PsrI GAACNNNNNNTAC 2 cut(s) 165, 197
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 1 cut(s) 464
SetI ASST 9 cut(s) 28, 88, 97, 118, 127, 141, 178, 272, 409
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 3 cut(s) 78, 117, 411
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 99, 393
SspMI CTAG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 99, 393
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 2 cut(s) 5, 244
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 74, 389
TseFI GTSAC 2 cut(s) 65, 321
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 2 cut(s) 65, 321
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 2 cut(s) 74, 389
Van91I CCANNNNNTGG 2 cut(s) 270, 424
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 358
XagI CCTNNNNNAGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.