RchiOBHm_Chr3g0484451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011615
Physical Location & Seq
Reverse (-)
30811809 .. 30813815
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44916

Sequence Viewer

Length: 384 bp
ATGAGATCTCTCGCACACCGATCAACATCTCATTCTTGTGGTTCTCTCTTCCATCGTTCTCTTTACCGTTCTAAGCAGCCATGGCCACCGCTGCGTTGCTCCGATCTCTACGACGTCATGACCTCGCTTCAGCCCCTCTGTTCCTACTGCTTGCCGAAGTACCGATCTGAAGTGAAATCGATGGGTGATGTCATGGTATTTGAGTTACGAAGCCTGGGACCTTGCACAATGTTCAGTGGCTCTGCAGCCTGTGGAGTTCATGTGCAAAGGGGATCAATTTCTGTACCCAGCAAGAGAATGAGATTGCTGTACTGTATTATCAAAATTTTTAAGGCATTCTTCACGAGCTCTGATCTCATGTTGCTTGTCTTTGACCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.45

Weight (kDa)

9.5

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 113, 189
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 3 cut(s) 161, 285, 311
AflIII ACRYGT 1 cut(s) 378
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
Alw21I GWGCWC 1 cut(s) 350
AlwI GGATC 1 cut(s) 280
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 76, 91, 245
ApoI RAATTY 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 78, 88, 257
BccI CCATC 2 cut(s) 60, 175
BciT130I CCWGG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 243
BglII AGATCT 1 cut(s) 5
BisI GCNGC 3 cut(s) 77, 92, 246
BlsI GCNGC 3 cut(s) 78, 93, 247
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 80, 214
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 80, 214
BseJI GATNNNNATC 1 cut(s) 25
BseXI GCAGC 3 cut(s) 78, 88, 257
BseYI CCCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 350
BslFI GGGAC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 6 cut(s) 5, 20, 103, 164, 272, 352
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 85
BspDI ATCGAT 1 cut(s) 179
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 80, 214
BssMI GATC 6 cut(s) 5, 20, 103, 164, 272, 352
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 68, 314
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 80
BstKTI GATC 6 cut(s) 8, 23, 106, 167, 275, 355
BstMBI GATC 6 cut(s) 5, 20, 103, 164, 272, 352
BstMWI GCNNNNNNNGC 2 cut(s) 82, 91
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 78, 88, 257
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 1 cut(s) 85
BsuTUI ATCGAT 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 152
CciI TCATGA 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 179
Csp6I GTAC 3 cut(s) 160, 284, 310
CviAII CATG 6 cut(s) 81, 118, 193, 260, 358, 379
CviJI RGCY 7 cut(s) 79, 85, 133, 213, 240, 248, 348
CviKI_1 RGCY 7 cut(s) 79, 85, 133, 213, 240, 248, 348
CviQI GTAC 3 cut(s) 160, 284, 310
DdeI CTNAG 1 cut(s) 72
DpnI GATC 6 cut(s) 7, 22, 105, 166, 274, 354
DpnII GATC 6 cut(s) 5, 20, 103, 164, 272, 352
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 113, 189
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 6 cut(s) 84, 121, 196, 263, 361, 382
FaiI YATR 6 cut(s) 82, 119, 194, 261, 359, 380
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 231
FatI CATG 6 cut(s) 80, 117, 192, 259, 357, 378
Fnu4HI GCNGC 3 cut(s) 77, 92, 246
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 77, 92, 246
GluI GCNGC 3 cut(s) 77, 92, 246
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 84, 121, 196, 263, 361, 382
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 103, 169, 352
Hpy188III TCNNGA 2 cut(s) 118, 343
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 68, 314
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 225, 245, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 91
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 84, 121, 196, 263, 361, 382
Kzo9I GATC 6 cut(s) 5, 20, 103, 164, 272, 352
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 200, 227, 262, 301
Lsp1109I GCAGC 3 cut(s) 78, 88, 257
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 204
MalI GATC 6 cut(s) 7, 22, 105, 166, 274, 354
MboI GATC 6 cut(s) 5, 20, 103, 164, 272, 352
MboII GAAGA 2 cut(s) 40, 331
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 2 cut(s) 276, 324
MluNI TGGCCA 1 cut(s) 85
MnlI CCTC 2 cut(s) 133, 146
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 82, 91
NcoI CCATGG 1 cut(s) 80
NdeII GATC 6 cut(s) 5, 20, 103, 164, 272, 352
NlaIII CATG 6 cut(s) 84, 121, 196, 263, 361, 382
NlaIV GGNNCC 1 cut(s) 219
NspI RCATGY 1 cut(s) 382
PagI TCATGA 1 cut(s) 117
PciI ACATGT 1 cut(s) 378
PctI GAATGC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 78, 93, 247
PpuMI RGGWCCY 1 cut(s) 218
PscI ACATGT 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 3 cut(s) 161, 285, 311
RsaNI GTAC 3 cut(s) 160, 284, 310
RseI CAYNNNNRTG 1 cut(s) 36
SacI GAGCTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 77, 92, 246
Sau3AI GATC 6 cut(s) 5, 20, 103, 164, 272, 352
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 350
SetI ASST 4 cut(s) 117, 125, 223, 350
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 2 cut(s) 276, 324
SsiI CCGC 1 cut(s) 89
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 68, 314
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 276, 324
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 241
TseI GCWGC 3 cut(s) 76, 91, 245
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 382
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.