Rw3G011340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011615
Physical Location & Seq
Forward (+)
11000570 .. 11002075
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011340.1

Sequence Viewer

Length: 258 bp
ATGTCATGGTATTTGAGTTACGAAGCCTGGGACCTTGCACAATGTTCAGTGGCTCTGCAGGTCTTGATGCCCAGTACTCCAGTAGAATATATCTACTCCATGCAAACCAATGAATCTAGATATTGTACATGTTTGTTTGGTTTTGAGGAGGAGGTTAAGAGCTCATACTGCAGTGGGGTTTTTCTAAAACAATCGAACTTCAAGCCTGTGGAGTTCATGTGCAAAGGGGATCATTTTCTGTACCCAGCAAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.94

Weight (kDa)

4.83

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 237
AfaI GTAC 3 cut(s) 76, 127, 242
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 56, 169
BfuAI ACCTGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse1I ACTGG 2 cut(s) 72, 80
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 72, 80
BseRI GAGGAG 2 cut(s) 161, 164
BseYI CCCAGC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 2 cut(s) 60, 173
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 2 cut(s) 72, 80
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 125
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 2 cut(s) 56, 169
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 54, 178
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 75, 126, 241
CviAII CATG 4 cut(s) 6, 100, 129, 217
CviJI RGCY 4 cut(s) 26, 53, 162, 205
CviKI_1 RGCY 4 cut(s) 26, 53, 162, 205
CviQI GTAC 3 cut(s) 75, 126, 241
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 4 cut(s) 9, 103, 132, 220
FaiI YATR 6 cut(s) 7, 90, 101, 130, 166, 218
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 5, 99, 128, 216
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 63
Hin1II CATG 4 cut(s) 9, 103, 132, 220
HinfI GANTC 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 64, 117
HpyCH4V TGCA 5 cut(s) 38, 58, 103, 171, 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
Hsp92II CATG 4 cut(s) 9, 103, 132, 220
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 13, 40, 44, 85, 93, 219
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 164
MnlI CCTC 3 cut(s) 139, 142, 145
MseI TTAA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 1 cut(s) 229
NlaIII CATG 4 cut(s) 9, 103, 132, 220
NlaIV GGNNCC 1 cut(s) 32
NspI RCATGY 1 cut(s) 132
PciI ACATGT 1 cut(s) 128
PfeI GAWTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 31
PscI ACATGT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PstI CTGCAG 2 cut(s) 60, 173
RsaI GTAC 3 cut(s) 76, 127, 242
RsaNI GTAC 3 cut(s) 75, 126, 241
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 36, 63, 156, 164
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 56, 169
SinI GGWCC 1 cut(s) 31
SspMI CTAG 1 cut(s) 117
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 26
TaqI TCGA 1 cut(s) 194
TatI WGTACW 2 cut(s) 74, 125
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 54, 178
TspDTI ATGAA 2 cut(s) 126, 205
TspRI CASTG 2 cut(s) 54, 178
VpaK11BI GGWCC 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 132
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.