Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011615

Physical Location & Seq

Genomic Coordinates Forward (+)

64863942 .. 64864328

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG468600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATGATGGAAAGGGTAGTTCATCAAATGATCTTCATTTTGCTGTTATCCATATCCCGCAAAAGTACCGCTGCACCGCAGACGCCAAAGCGTGATTGCCCAACGAAGTGTGGATATGTTACCATCCCGTACCCTTTCGGGATTGGACCTGATGAAAGTTGCTACTATGACGAATGGTTTCAAATCGACTGCAACGAATCTACCGAGGGGAAGCCTTTCTTGAGGCGTACCAAATTGGAGGTGCTGAATATATCTACAAATGGATGGCTTCAGGTGTACAGCCCCATTACATTCTTCTGCGAAGGAAACAATAGTACCCAACTGGCGGATTTAACCGACACAGCCCTTTCGTCTACTCTCAGAGCTACAACATATTCACTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

128

Amino Acids

14.55

Weight (kDa)

5.3

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 87	3.2e-13	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0484431 RchiOBHm_Chr3g0484451 RchiOBHm_Chr3g0484521 RchiOBHm_Chr6g0264571 RchiOBHm_Chr7g0234091 RchiOBHm_Chr7g0234101
rosa_laevigata	RLG00000019653
rosa_roxburghii	Rroxscaffold_6G00397740
rosa_rugosa	Rorug02G0435500 Rorug04G0434900
rosa_samantha	Rh2BG509000 Rh2DG520800 Rh3AG260700 Rh3AG261300 Rh4AG296000 Rh4BG302500 Rh5DG374700 Rh7AG410800 Rh7AG468600
rosa_wichuraiana	Rw3G011340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	4 cut(s)	58, 69, 77, 326
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	5 cut(s)	67, 131, 229, 278, 316
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	182
AleI	CACNNNNGTG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	177, 215
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	131, 258
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	123, 269
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	58, 69, 77, 326
BspCNI	CTCAG	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	123, 269
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	123, 269
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	5 cut(s)	66, 130, 228, 277, 315
CviJI	RGCY	5 cut(s)	214, 268, 282, 344, 365
CviKI_1	RGCY	5 cut(s)	214, 268, 282, 344, 365
CviQI	GTAC	5 cut(s)	66, 130, 228, 277, 315
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	254
FaiI	YATR	5 cut(s)	53, 117, 168, 251, 373
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	110, 276
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	277, 354
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	139, 220
Hpy8I	GTNNAC	2 cut(s)	277, 354
HpyAV	CCTTC	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	74, 192, 382
HpyF3I	CTNAG	1 cut(s)	359
Hsp92I	GRCGYC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	162, 257, 308
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	25, 286
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	3 cut(s)	199, 216, 232
MroXI	GAANNNNTTC	2 cut(s)	177, 215
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	71
NdeII	GATC	1 cut(s)	30
OliI	CACNNNNGTG	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 201
PdmI	GAANNNNTTC	2 cut(s)	177, 215
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	384
RsaI	GTAC	5 cut(s)	67, 131, 229, 278, 316
RsaNI	GTAC	5 cut(s)	66, 130, 228, 277, 315
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	146
SetI	ASST	4 cut(s)	151, 243, 276, 367
SfcI	CTRYAG	1 cut(s)	380
SgeI	CNNG	9 cut(s)	69, 104, 139, 151, 161, 217, 232, 284, 335
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	4 cut(s)	58, 69, 77, 326
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	233
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	11, 25, 168
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	2 cut(s)	177, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.