RchiOBHm_Chr3g0489011

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009830
Physical Location & Seq
Forward (+)
36728592 .. 36730402
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGCAGAAAATGAAGAGCCTTGGGGGAAATGGCAGCAGTGGGAGGCTATCAATGGAGGAGAATGAGGATGAAGAGACTTCGAGACTGGCCATATTAACCTTCCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTGAAGGAGAGGGTTGAACTTCAATTAGGTCGTGCGGAGGAAGAAACTAGGCGCTTGGCACAAATTTGGGAAGAGCTTGAAGCAATGGCAGATCCGATGAGGAAGGAACTTGCAAATGTAAGGAAGAAAATCGACATGGTTAATCGAGAGCTGAAGCCCTTGGGACTCAGCTGCCAGAAGAAGGAAAAAGAATACAAGGAAGTCCTGGAGAGCTTCAATGAAAAGAACAAAGAAAAGGCTCAACTTGTAACCATAATGATGGAGCTTCTGACTGAGAGTGAGAGGTTGAGGATGCAAAAGCTAGAGGAGCTGAGCAAGAACATAGAACTATCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

159

Amino Acids

18.74

Weight (kDa)

5.42

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 7 - 156 1.6e-72 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 4 cut(s) 158, 164, 221, 358
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 8 cut(s) 107, 217, 292, 312, 354, 406, 442, 451
AluI AGCT 8 cut(s) 107, 217, 292, 312, 354, 406, 442, 451
Alw26I GTCTC 2 cut(s) 68, 76
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 33, 312
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 45, 299
BccI CCATC 2 cut(s) 130, 394
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 68, 76
BfaI CTAG 3 cut(s) 108, 189, 443
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 2 cut(s) 34, 313
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 2 cut(s) 35, 314
Bme1390I CCNGG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 19, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 19, 300
BseGI GGATG 2 cut(s) 73, 438
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 322, 405, 443
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 3 cut(s) 71, 131, 461
BseXI GCAGC 2 cut(s) 45, 299
BshFI GGCC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 68, 76
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 232
Bsp1720I GCTNAGC 1 cut(s) 452
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 321, 406, 444
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 2 cut(s) 8, 207
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 19, 300
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 19, 300
Bst2UI CCWGG 1 cut(s) 347
Bst6I CTCTTC 4 cut(s) 8, 66, 108, 207
BstDEI CTNAG 3 cut(s) 308, 414, 452
BstF5I GGATG 2 cut(s) 73, 438
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 68, 76
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 45, 299
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 73, 438
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 195
CviAII CATG 1 cut(s) 277
DdeI CTNAG 3 cut(s) 308, 414, 452
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 8, 66, 108, 207
EarI CTCTTC 4 cut(s) 8, 66, 108, 207
Eco130I CCWWGG 2 cut(s) 19, 300
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 2 cut(s) 19, 300
ErhI CCWWGG 2 cut(s) 19, 300
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 92, 278, 395, 464
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 34, 313
FokI GGATG 2 cut(s) 80, 445
Fsp4HI GCNGC 2 cut(s) 34, 313
FspBI CTAG 3 cut(s) 108, 189, 443
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 34, 313
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 237, 411
Hpy188III TCNNGA 2 cut(s) 81, 287
HpyAV CCTTC 4 cut(s) 109, 139, 238, 316
HpyCH4V TGCA 3 cut(s) 4, 254, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 308, 414, 452
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 2 cut(s) 8, 207
LmnI GCTCC 2 cut(s) 403, 448
LpnPI CCDG 4 cut(s) 71, 329, 332, 359
Lsp1109I GCAGC 2 cut(s) 45, 299
LweI GCATC 1 cut(s) 423
MaeI CTAG 3 cut(s) 108, 189, 443
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 9 cut(s) 25, 83, 125, 142, 145, 194, 224, 277, 331
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 164, 204
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 95, 282
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 448
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 280
PciSI GCTCTTC 2 cut(s) 8, 207
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 35, 314
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 398
SapI GCTCTTC 2 cut(s) 8, 207
SaqAI TTAA 2 cut(s) 95, 282
SatI GCNGC 2 cut(s) 34, 313
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 2 cut(s) 164, 204
SsiI CCGC 1 cut(s) 176
SspMI CTAG 3 cut(s) 108, 189, 443
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 19, 300
TaqI TCGA 3 cut(s) 80, 273, 286
TasI AATT 2 cut(s) 164, 204
Tru1I TTAA 2 cut(s) 95, 282
Tru9I TTAA 2 cut(s) 95, 282
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 33, 312
TspDTI ATGAA 3 cut(s) 26, 84, 375
TspRI CASTG 1 cut(s) 43
XapI RAATTY 1 cut(s) 204
XspI CTAG 3 cut(s) 108, 189, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.