RchiOBHm_Chr3g0491551

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006327
Physical Location & Seq
Forward (+)
38280339 .. 38286225
5887 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ATGGGCATCGCAGGAGGAACAAGGAATTCGTTGCTCCACTTCTGTTGTTTGGCCAAAAATGTGTTAGGCCTCTCTCTGCCAACCATAGGCTCTCTTCCTTGTCACATGTGTATACAAAGGCAAAGCTACCGGGTTATGGCATCTTTCATACTCCCAGTAGATTCTGCATTGCTGGGCCGATCAAATATGTATCAGTATCAAACTCTTCTCAGAAATTTGCCACCCACCAGATGCATGAGTAGGACTTCGTTTGAGCTCAACACAGACAATGGTGTTGTGCGGTTTTCAATTGGTAAGCCACTTGATGAAACTAGTTCCTTGACACAAGGGAAGAAGGTGGCCAAACAAGTTAAAATGTCCAAGAAGGCCAAACTGAATGAACTACGATTTTATCGTCTAAAGGCCAAAAAGAAGATCAATTCTCCAAATCCGGAAGTTAGGATTAGATACAAACTTGAAAAGGCAAAACGAAAGGAAGCATGGTTGATTGAGAAGTTGAGAAAATTCCAGGTTCACAAAGCTTCTGCTGAAACACATGATCCTGAAATTTTAACTGAAGAAGAAAAGCATTATCTTAAGCGAACTGGTGAGAAAAAGAAGAACTATGTGCCAGTTGGAAGGCGGGGAGTATTTGGAGGGGTTGTTTTGAATATGCATCTGCATTGGAAGAAGCATGAGACAGTAAAGATTATATGCAAACCTTGTAAGCCAGGACAGGTTCATGAATATGCTGATGAGCTAGCTCGGCTGAGCAAAGGCATAGTGATTGACATCAAATCTAATAATAGTATAATTTTCTATCGGGGGAAGAACTATGTGCAGCCGGAAGTAATGTCACCACCAGATACACTGTCCAAAAATAAGGCGCTCGAAAAATATAGGTATGAGCAGTCCCTTGAACATACAAGTCAGTTTATTGAAAAATTGGAGAAAGAACTAGAGGAATATCACCAGCATCTTGCTCGGTTTAAGAAAGTAAAAGAGGATACGACGCAAGATTGTTTGATCTATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

338

Amino Acids

39.13

Weight (kDa)

9.76

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 184 - 268 8.1e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 2 cut(s) 280, 622
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 51, 339
AcsI RAATTY 4 cut(s) 25, 214, 503, 546
AcuI CTGAAG 1 cut(s) 576
AfiI CCNNNNNNNGG 2 cut(s) 86, 136
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 5 cut(s) 288, 458, 649, 899, 920
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 2 cut(s) 507, 709
AluBI AGCT 5 cut(s) 126, 256, 521, 739, 743
AluI AGCT 5 cut(s) 126, 256, 521, 739, 743
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 533
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 6 cut(s) 51, 67, 175, 339, 366, 402
ApeKI GCWGC 1 cut(s) 820
ApoI RAATTY 4 cut(s) 25, 214, 503, 546
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 599, 828, 941
AsuNHI GCTAGC 1 cut(s) 739
BalI TGGCCA 2 cut(s) 53, 341
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 944, 978
BciT130I CCWGG 2 cut(s) 509, 711
BciVI GTATCC 1 cut(s) 979
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 671
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 3 cut(s) 312, 740, 938
BfmI CTRYAG 1 cut(s) 1009
BfoI RGCGCY 1 cut(s) 869
BfrI CTTAAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 979
BisI GCNGC 1 cut(s) 821
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 1 cut(s) 822
Bme1390I CCNGG 3 cut(s) 131, 509, 711
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 3 cut(s) 131, 509, 711
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 5 cut(s) 15, 149, 221, 664, 964
BmtI GCTAGC 1 cut(s) 743
BmuI ACTGGG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 770
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 136
Bse1I ACTGG 3 cut(s) 155, 589, 611
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 770
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 509, 711
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 2 cut(s) 86, 136
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 223, 740
BseNI ACTGG 3 cut(s) 155, 589, 611
BseXI GCAGC 1 cut(s) 832
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 130, 431, 824
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 2 cut(s) 86, 136
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 4 cut(s) 179, 414, 538, 1005
Bsp1720I GCTNAGC 1 cut(s) 749
BspACI CCGC 2 cut(s) 280, 622
BspANI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BspCNI CTCAG 2 cut(s) 222, 741
BspEI TCCGGA 1 cut(s) 430
BspHI TCATGA 1 cut(s) 721
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 3 cut(s) 155, 589, 611
BssMI GATC 4 cut(s) 179, 414, 538, 1005
BssNAI GTATAC 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 509, 711
Bst4CI ACNGT 2 cut(s) 682, 852
Bst6I CTCTTC 2 cut(s) 99, 210
BstAFI CTTAAG 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 2 cut(s) 209, 749
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 4 cut(s) 182, 417, 541, 1008
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 4 cut(s) 179, 414, 538, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 745
BstNI CCWGG 2 cut(s) 509, 711
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 3 cut(s) 129, 507, 709
BstSFI CTRYAG 1 cut(s) 1009
BstV1I GCAGC 1 cut(s) 832
BstZ17I GTATAC 1 cut(s) 113
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
BtsIMutI CAGTG 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 1000
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviAII CATG 6 cut(s) 106, 235, 480, 536, 674, 722
DdeI CTNAG 2 cut(s) 209, 749
DpnI GATC 4 cut(s) 181, 416, 540, 1007
DpnII GATC 4 cut(s) 179, 414, 538, 1005
EaeI YGGCCR 2 cut(s) 51, 339
Eam1104I CTCTTC 2 cut(s) 99, 210
EarI CTCTTC 2 cut(s) 99, 210
Ecl136II GAGCTC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 576
EcoICRI GAGCTC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 507, 709
EcoT22I ATGCAT 2 cut(s) 236, 657
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 6 cut(s) 109, 238, 483, 539, 677, 725
FaqI GGGAC 1 cut(s) 877
FatI CATG 6 cut(s) 105, 234, 479, 535, 673, 721
FauI CCCGC 1 cut(s) 615
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 821
FspBI CTAG 3 cut(s) 312, 740, 938
GlaI GCGC 1 cut(s) 867
GluI GCNGC 1 cut(s) 821
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 6 cut(s) 53, 69, 177, 341, 368, 404
HapII CCGG 3 cut(s) 130, 431, 824
HgaI GACGC 1 cut(s) 1000
HhaI GCGC 1 cut(s) 868
Hin1II CATG 6 cut(s) 109, 238, 483, 539, 677, 725
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 161
HpaII CCGG 3 cut(s) 130, 431, 824
HphI GGTGA 3 cut(s) 599, 828, 941
Hpy166II GTNNAC 2 cut(s) 113, 514
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 431, 542, 722
Hpy8I GTNNAC 2 cut(s) 113, 514
Hpy99I CGWCG 1 cut(s) 994
HpyAV CCTTC 3 cut(s) 328, 358, 612
HpyCH4III ACNGT 2 cut(s) 682, 852
HpyCH4V TGCA 6 cut(s) 167, 234, 655, 661, 696, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 745
HpyF3I CTNAG 2 cut(s) 209, 749
Hsp92II CATG 6 cut(s) 109, 238, 483, 539, 677, 725
HspAI GCGC 1 cut(s) 866
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 179, 414, 538, 1005
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 5 cut(s) 15, 149, 221, 664, 964
MaeI CTAG 3 cut(s) 312, 740, 938
MaeIII GTNAC 2 cut(s) 101, 834
MalI GATC 4 cut(s) 181, 416, 540, 1007
MboI GATC 4 cut(s) 179, 414, 538, 1005
MboII GAAGA 9 cut(s) 86, 197, 343, 424, 569, 572, 610, 679, 820
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 53, 341
MluCI AATT 8 cut(s) 25, 214, 288, 418, 503, 546, 792, 923
MluNI TGGCCA 2 cut(s) 53, 341
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 5 cut(s) 8, 80, 629, 934, 976
Mox20I TGGCCA 2 cut(s) 53, 341
Mph1103I ATGCAT 2 cut(s) 236, 657
MroI TCCGGA 1 cut(s) 430
MscI TGGCCA 2 cut(s) 53, 341
MseI TTAA 4 cut(s) 351, 551, 576, 969
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 2 cut(s) 53, 341
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 3 cut(s) 130, 431, 824
MspR9I CCNGG 3 cut(s) 131, 509, 711
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 2 cut(s) 509, 711
MwoI GCNNNNNNNGC 1 cut(s) 745
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 179, 414, 538, 1005
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 6 cut(s) 109, 238, 483, 539, 677, 725
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 101, 834
NsiI ATGCAT 2 cut(s) 236, 657
NspI RCATGY 1 cut(s) 109
PagI TCATGA 1 cut(s) 721
PceI AGGCCT 1 cut(s) 69
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 822
PscI ACATGT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 507, 709
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 507, 709
PspPI GGNCC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 4 cut(s) 351, 551, 576, 969
SatI GCNGC 1 cut(s) 821
Sau3AI GATC 4 cut(s) 179, 414, 538, 1005
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 3 cut(s) 131, 509, 711
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 5 cut(s) 15, 149, 221, 664, 964
SfcI CTRYAG 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 8 cut(s) 25, 214, 288, 418, 503, 546, 792, 923
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 2 cut(s) 280, 622
SspMI CTAG 3 cut(s) 312, 740, 938
SstI GAGCTC 1 cut(s) 258
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 129, 507, 709
TaaI ACNGT 2 cut(s) 682, 852
TaqI TCGA 1 cut(s) 870
TasI AATT 8 cut(s) 25, 214, 288, 418, 503, 546, 792, 923
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 4 cut(s) 351, 551, 576, 969
Tru9I TTAA 4 cut(s) 351, 551, 576, 969
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 2 cut(s) 101, 834
TseI GCWGC 1 cut(s) 820
Tsp45I GTSAC 2 cut(s) 101, 834
TspDTI ATGAA 5 cut(s) 136, 321, 393, 710, 738
TspRI CASTG 1 cut(s) 855
Vha464I CTTAAG 1 cut(s) 575
XapI RAATTY 4 cut(s) 25, 214, 503, 546
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 3 cut(s) 312, 740, 938
Zsp2I ATGCAT 2 cut(s) 236, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.