RchiOBHm_Chr3g0494371

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006331
Physical Location & Seq
Reverse (-)
43125650 .. 43130562
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGACAATGACTCCGAACCTTGTATCACTCACTCGTACATCCCCATTCTTAAATCCTTTTGTAGGAGGATGTTGTTCCCGTAAACCCATTTTGCATTCTACTACGATTTCAGCAAATCGAATTCAGACCCGTTCTCACTCGTACGCTCTGAATTCCGGTAATGGAATAGGATTCCGGCAACTGCGTTTTAGTCCGAAGGCGGTTTCTGATGATGGGTCCAACGGAAGTGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGAAGGTGAAGGTGAAGGTGGTGGCAAAGGTGATGATAGCAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCAAAGTATCCTGCGTCGATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACGTTGCCTGGAGCATCAGGTGCATTCGTGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTACATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTCCAGGTTCTTACCGCTAATGTTATTGCTTTGGCATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

288

Amino Acids

31.21

Weight (kDa)

9.1

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 219 - 278 1.5e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 200, 246, 795
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 2 cut(s) 120, 151
AfaI GTAC 4 cut(s) 37, 143, 684, 771
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 860
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 2 cut(s) 565, 783
AluBI AGCT 4 cut(s) 392, 439, 691, 842
AluI AGCT 4 cut(s) 392, 439, 691, 842
AlwI GGATC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 2 cut(s) 120, 151
Asp700I GAANNNNTTC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 216, 515
AsuHPI GGTGA 4 cut(s) 302, 308, 314, 332
AvaII GGWCC 2 cut(s) 216, 515
BbsI GAAGAC 1 cut(s) 673
BbvI GCAGC 1 cut(s) 510
BccI CCATC 2 cut(s) 206, 224
BciT130I CCWGG 2 cut(s) 567, 785
BciVI GTATCC 2 cut(s) 384, 732
BclI TGATCA 2 cut(s) 448, 601
BfuI GTATCC 2 cut(s) 384, 732
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 2 cut(s) 567, 785
Bme18I GGWCC 2 cut(s) 216, 515
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 216, 515
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 567, 785
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 673
BpmI CTGGAG 2 cut(s) 588, 680
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 558, 663
BseBI CCWGG 2 cut(s) 567, 785
BseGI GGATG 2 cut(s) 38, 74
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 558, 663
BseXI GCAGC 1 cut(s) 510
BseYI CCCAGC 1 cut(s) 496
BsiSI CCGG 2 cut(s) 156, 175
BsiWI CGTACG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 62
BsmI GAATGC 2 cut(s) 94, 581
Bsp143I GATC 3 cut(s) 358, 448, 601
BspACI CCGC 3 cut(s) 200, 246, 795
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 366
BsrI ACTGG 2 cut(s) 558, 663
BssMI GATC 3 cut(s) 358, 448, 601
Bst2UI CCWGG 2 cut(s) 567, 785
Bst4CI ACNGT 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 437, 720
BstDEI CTNAG 1 cut(s) 545
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 38, 74
BstKTI GATC 3 cut(s) 361, 451, 604
BstMBI GATC 3 cut(s) 358, 448, 601
BstMWI GCNNNNNNNGC 2 cut(s) 578, 719
BstNI CCWGG 2 cut(s) 567, 785
BstSCI CCNGG 2 cut(s) 565, 783
BstV1I GCAGC 1 cut(s) 510
BstV2I GAAGAC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 2 cut(s) 384, 732
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 2 cut(s) 38, 74
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 2 cut(s) 437, 720
Cfr13I GGNCC 2 cut(s) 216, 515
CseI GACGC 2 cut(s) 369, 529
Csp6I GTAC 4 cut(s) 36, 142, 683, 770
CspCI CAANNNNNGTGG 2 cut(s) 683, 718
CviAII CATG 4 cut(s) 257, 348, 459, 816
CviJI RGCY 5 cut(s) 392, 439, 591, 691, 842
CviKI_1 RGCY 5 cut(s) 392, 439, 591, 691, 842
CviQI GTAC 4 cut(s) 36, 142, 683, 770
DdeI CTNAG 1 cut(s) 545
DpnI GATC 3 cut(s) 360, 450, 603
DpnII GATC 3 cut(s) 358, 448, 601
DraI TTTAAA 1 cut(s) 838
EciI GGCGGA 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 216, 515
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRI GAATTC 2 cut(s) 120, 151
EcoRII CCWGG 2 cut(s) 565, 783
FaeI CATG 4 cut(s) 260, 351, 462, 819
FaiI YATR 4 cut(s) 258, 349, 460, 817
FalI AAGNNNNNCTT 1 cut(s) 840
FatI CATG 4 cut(s) 256, 347, 458, 815
FbaI TGATCA 2 cut(s) 448, 601
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 2 cut(s) 25, 81
Fsp4HI GCNGC 1 cut(s) 524
GluI GCNGC 1 cut(s) 524
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 2 cut(s) 588, 680
HapII CCGG 2 cut(s) 156, 175
HgaI GACGC 2 cut(s) 369, 529
Hin1II CATG 4 cut(s) 260, 351, 462, 819
HinfI GANTC 2 cut(s) 10, 171
HpaII CCGG 2 cut(s) 156, 175
HphI GGTGA 4 cut(s) 302, 308, 314, 332
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 7 cut(s) 15, 126, 150, 195, 208, 396, 519
Hpy188III TCNNGA 2 cut(s) 464, 586
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 2 cut(s) 385, 523
HpyAV CCTTC 6 cut(s) 190, 287, 293, 299, 602, 681
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 2 cut(s) 468, 560
HpyCH4V TGCA 5 cut(s) 94, 368, 404, 526, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 719
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 2 cut(s) 468, 560
Hsp92II CATG 4 cut(s) 260, 351, 462, 819
Ksp22I TGATCA 2 cut(s) 448, 601
Kzo9I GATC 3 cut(s) 358, 448, 601
LmnI GCTCC 1 cut(s) 569
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 1 cut(s) 581
MaeII ACGT 2 cut(s) 468, 560
MaeIII GTNAC 1 cut(s) 556
MalI GATC 3 cut(s) 360, 450, 603
MboI GATC 3 cut(s) 358, 448, 601
MboII GAAGA 3 cut(s) 353, 678, 848
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 358
MluCI AATT 8 cut(s) 120, 151, 235, 331, 678, 724, 749, 779
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 243, 542
MroXI GAANNNNTTC 1 cut(s) 670
MseI TTAA 4 cut(s) 50, 410, 756, 837
MspI CCGG 2 cut(s) 156, 175
MspR9I CCNGG 2 cut(s) 567, 785
MunI CAATTG 1 cut(s) 331
Mva1269I GAATGC 2 cut(s) 94, 581
MvaI CCWGG 2 cut(s) 567, 785
MwoI GCNNNNNNNGC 2 cut(s) 578, 719
NdeII GATC 3 cut(s) 358, 448, 601
NlaIII CATG 4 cut(s) 260, 351, 462, 819
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 556
PctI GAATGC 2 cut(s) 94, 581
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 565, 783
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 565, 783
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 216, 515
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 4 cut(s) 37, 143, 684, 771
RsaNI GTAC 4 cut(s) 36, 142, 683, 770
SaqAI TTAA 4 cut(s) 50, 410, 756, 837
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 3 cut(s) 358, 448, 601
Sau96I GGNCC 2 cut(s) 216, 515
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 567, 785
SfaNI GCATC 1 cut(s) 581
SinI GGWCC 2 cut(s) 216, 515
Sse9I AATT 8 cut(s) 120, 151, 235, 331, 678, 724, 749, 779
SsiI CCGC 3 cut(s) 200, 246, 795
StyD4I CCNGG 2 cut(s) 565, 783
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 2 cut(s) 471, 563
TaqI TCGA 2 cut(s) 118, 383
TasI AATT 8 cut(s) 120, 151, 235, 331, 678, 724, 749, 779
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 50, 410, 756, 837
Tru9I TTAA 4 cut(s) 50, 410, 756, 837
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 663
VpaK11BI GGWCC 2 cut(s) 216, 515
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 2 cut(s) 120, 151
XmnI GAANNNNTTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.