RchiOBHm_Chr3g0497171

galactose-1-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015115
Physical Location & Seq
Forward (+)
48851792 .. 48854225
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGGAGAAAGGAAAAATGGGAGGCAGGCCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGCCAACCCAACAACAACAATATCAACAGTCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCCGAAATCTTCCGGGTTCCGCCCGACGACCCCAAATGGAAACTCCGAGTGATCCAGAACATGTACCCGGCGCTGAGCCGTGCTGCGGATGTCCCCGTCATCACTGTCCCTGTCCCTGCCCAGGAGGAATCCTCCTCCTTGGGTCAGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACTCTCTTCACCTCTCCGATCTTTCCCCAACTCAGATCGCCCATGTTCTTCTGGCCTATACCACCAGGATCCACCACTTGATCGCTAATCATTCCATCAAATACGTCCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAGGACTATTTTAATCGGACTGGCAAATGTAGTGTCTGTGAATTCAACTCGAACGATCTTTTGATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATATGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCTGACAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTCGGAAGATGGCTTTACAGTTGAATAATCCACCATTTAATTTCGTGATTCAGACTTCTCCTCTTCAGGACGGTGCTTCAGAGTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGCTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAGTTTTGAGGGAAGTAAATGTTTTACCTTTGGAAGGAGATGATTAA

Protein Analysis

355

Amino Acids

39.46

Weight (kDa)

6.51

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalP_UDP_transf PF01087 14 - 194 1.4e-16 Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921 PF16268 155 - 339 5.2e-09 Domain of unknown function (DUF4921)
GalP_UDP_tr_C PF02744 203 - 345 6.3e-07 Galactose-1-phosphate uridyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18200
fragaria_vesca FvH4_1g28080
malus_domestica MD12G1003100.v1.1
prunus_persica Prupe.7G003700_v2.0.a1
pyrus_communis pycom12g00280
rosa_chinensis RchiOBHm_Chr3g0497171
rosa_laevigata RLG00000022474
rosa_multiflora Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii Rroxscaffold_6G00388310
rosa_rugosa Rorug03G0291500
rosa_samantha Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana Rw3G029430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 370
AciI CCGC 3 cut(s) 215, 281, 386
AclWI GGATC 7 cut(s) 241, 454, 467, 670, 749, 805, 818
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 3 cut(s) 507, 875, 888
AcyI GRCGYC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 260, 708
AfiI CCNNNNNNNGG 4 cut(s) 280, 316, 370, 1055
AflIII ACRYGT 1 cut(s) 255
AgeI ACCGGT 1 cut(s) 60
AgsI TTSAA 6 cut(s) 109, 508, 658, 702, 850, 971
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 3 cut(s) 315, 455, 498
AluBI AGCT 2 cut(s) 527, 962
AluI AGCT 2 cut(s) 527, 962
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 176, 374
AlwI GGATC 7 cut(s) 241, 454, 467, 670, 749, 805, 818
AoxI GGCC 3 cut(s) 26, 81, 444
ApeKI GCWGC 6 cut(s) 278, 593, 716, 959, 984, 1016
ApoI RAATTY 1 cut(s) 653
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AsiGI ACCGGT 1 cut(s) 60
AspLEI GCGC 2 cut(s) 194, 268
AspS9I GGNCC 1 cut(s) 27
AsuC2I CCSGG 2 cut(s) 209, 263
AsuHPI GGTGA 7 cut(s) 64, 69, 79, 111, 385, 392, 678
BamHI GGATCC 2 cut(s) 459, 810
BbsI GAAGAC 1 cut(s) 994
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 6 cut(s) 265, 580, 703, 971, 971, 1028
BccI CCATC 3 cut(s) 494, 556, 829
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 3 cut(s) 317, 457, 500
BcnI CCSGG 2 cut(s) 209, 263
BcoDI GTCTC 2 cut(s) 176, 374
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 6 cut(s) 279, 594, 717, 960, 985, 1017
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 6 cut(s) 280, 595, 718, 961, 986, 1018
Bme1390I CCNGG 5 cut(s) 209, 263, 317, 457, 500
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 5 cut(s) 29, 213, 362, 461, 812
BmrFI CCNGG 5 cut(s) 209, 263, 317, 457, 500
BmrI ACTGGG 3 cut(s) 58, 360, 940
BmsI GCATC 4 cut(s) 542, 692, 772, 1003
BmuI ACTGGG 3 cut(s) 58, 360, 940
BpiI GAAGAC 1 cut(s) 994
BplI GAGNNNNNCTC 4 cut(s) 311, 343, 532, 564
Bpu1102I GCTNAGC 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 209, 263
BsaBI GATNNNNATC 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 4 cut(s) 315, 333, 514, 802
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 316, 370, 1055
Bse118I RCCGGY 3 cut(s) 60, 79, 121
Bse1I ACTGG 6 cut(s) 53, 355, 637, 946, 985, 998
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 3 cut(s) 317, 457, 500
BseDI CCNNGG 4 cut(s) 315, 333, 514, 802
BseGI GGATG 2 cut(s) 289, 1018
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 4 cut(s) 280, 316, 370, 1055
BseMII CTCAG 2 cut(s) 260, 437
BseNI ACTGG 6 cut(s) 53, 355, 637, 946, 985, 998
BseRI GAGGAG 3 cut(s) 319, 753, 876
BseXI GCAGC 6 cut(s) 265, 580, 703, 971, 971, 1028
BseYI CCCAGC 1 cut(s) 527
BshFI GGCC 3 cut(s) 28, 83, 446
BshTI ACCGGT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 5 cut(s) 61, 80, 122, 208, 263
BslFI GGGAC 4 cut(s) 147, 272, 287, 293
BslI CCNNNNNNNGG 4 cut(s) 280, 316, 370, 1055
BsmAI GTCTC 2 cut(s) 176, 374
BsmFI GGGAC 4 cut(s) 147, 272, 287, 293
BsnI GGCC 3 cut(s) 28, 83, 446
Bso31I GGTCTC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
Bsp1720I GCTNAGC 1 cut(s) 269
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 3 cut(s) 215, 281, 386
BspANI GGCC 3 cut(s) 28, 83, 446
BspCNI CTCAG 2 cut(s) 261, 436
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 5 cut(s) 29, 213, 362, 461, 812
BspPI GGATC 7 cut(s) 241, 454, 467, 670, 749, 805, 818
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 3 cut(s) 60, 79, 121
BsrI ACTGG 6 cut(s) 53, 355, 637, 946, 985, 998
BssAI RCCGGY 3 cut(s) 60, 79, 121
BssECI CCNNGG 4 cut(s) 315, 333, 514, 802
BssMI GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 333, 514, 802
Bst2UI CCWGG 3 cut(s) 317, 457, 500
Bst4CI ACNGT 5 cut(s) 156, 301, 554, 846, 899
Bst6I CTCTTC 2 cut(s) 402, 894
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 269, 423
BstDSI CCRYGG 1 cut(s) 514
BstENI CCTNNNNNAGG 1 cut(s) 1053
BstF5I GGATG 2 cut(s) 289, 1018
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 194, 268
BstKTI GATC 9 cut(s) 249, 412, 429, 462, 474, 670, 678, 744, 813
BstMAI GTCTC 2 cut(s) 176, 374
BstMBI GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
BstMWI GCNNNNNNNGC 2 cut(s) 593, 791
BstNI CCWGG 3 cut(s) 317, 457, 500
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 5 cut(s) 207, 261, 315, 455, 498
BstV1I GCAGC 6 cut(s) 265, 580, 703, 971, 971, 1028
BstV2I GAAGAC 1 cut(s) 994
BstX2I RGATCY 2 cut(s) 459, 810
BstYI RGATCY 2 cut(s) 459, 810
BsuRI GGCC 3 cut(s) 28, 83, 446
BtgI CCRYGG 1 cut(s) 514
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 289, 1018
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 345
CfoI GCGC 2 cut(s) 194, 268
Cfr10I RCCGGY 3 cut(s) 60, 79, 121
Cfr13I GGNCC 1 cut(s) 27
CseI GACGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 259, 707
CspAI ACCGGT 1 cut(s) 60
CviAII CATG 7 cut(s) 256, 346, 434, 515, 680, 773, 823
CviQI GTAC 2 cut(s) 259, 707
DdeI CTNAG 2 cut(s) 269, 423
DpnI GATC 9 cut(s) 248, 411, 428, 461, 473, 669, 677, 743, 812
DpnII GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 402, 894
EarI CTCTTC 2 cut(s) 402, 894
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 333, 514, 802
Eco31I GGTCTC 1 cut(s) 374
Eco57I CTGAAG 3 cut(s) 507, 875, 888
EcoNI CCTNNNNNAGG 1 cut(s) 1053
EcoO109I RGGNCCY 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 315, 455, 498
EcoT14I CCWWGG 3 cut(s) 333, 514, 802
EcoT22I ATGCAT 1 cut(s) 685
ErhI CCWWGG 3 cut(s) 333, 514, 802
FaeI CATG 7 cut(s) 259, 349, 437, 518, 683, 776, 826
FaqI GGGAC 4 cut(s) 147, 272, 287, 293
FatI CATG 7 cut(s) 255, 345, 433, 514, 679, 772, 822
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 6 cut(s) 279, 594, 717, 960, 985, 1017
FokI GGATG 2 cut(s) 296, 1025
Fsp4HI GCNGC 6 cut(s) 279, 594, 717, 960, 985, 1017
GlaI GCGC 2 cut(s) 193, 267
GluI GCNGC 6 cut(s) 279, 594, 717, 960, 985, 1017
GsaI CCCAGC 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 3 cut(s) 28, 83, 446
HapII CCGG 5 cut(s) 61, 80, 122, 208, 263
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 194, 268
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 7 cut(s) 259, 349, 437, 518, 683, 776, 826
Hin6I GCGC 2 cut(s) 192, 266
HinP1I GCGC 2 cut(s) 192, 266
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 4 cut(s) 323, 541, 605, 874
HpaII CCGG 5 cut(s) 61, 80, 122, 208, 263
HphI GGTGA 7 cut(s) 64, 69, 79, 111, 385, 392, 678
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 9 cut(s) 103, 242, 409, 426, 558, 630, 831, 879, 907
Hpy188III TCNNGA 7 cut(s) 197, 250, 346, 733, 814, 871, 893
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 3 cut(s) 130, 224, 371
HpyAV CCTTC 5 cut(s) 37, 108, 607, 739, 1049
HpyCH4III ACNGT 5 cut(s) 156, 301, 554, 846, 899
HpyCH4IV ACGT 2 cut(s) 369, 495
HpyCH4V TGCA 4 cut(s) 683, 934, 959, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 791
HpyF3I CTNAG 2 cut(s) 269, 423
HpySE526I ACGT 2 cut(s) 369, 495
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 7 cut(s) 259, 349, 437, 518, 683, 776, 826
HspAI GCGC 2 cut(s) 192, 266
Kzo9I GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 6 cut(s) 265, 580, 703, 971, 971, 1028
LweI GCATC 4 cut(s) 542, 692, 772, 1003
MaeII ACGT 2 cut(s) 369, 495
MaeIII GTNAC 3 cut(s) 52, 542, 909
MalI GATC 9 cut(s) 248, 411, 428, 461, 473, 669, 677, 743, 812
MboI GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
MboII GAAGA 6 cut(s) 196, 389, 431, 844, 881, 994
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 2 cut(s) 459, 810
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 4 cut(s) 653, 702, 865, 972
MlyI GAGTC 2 cut(s) 550, 599
Mph1103I ATGCAT 1 cut(s) 685
MseI TTAA 4 cut(s) 624, 864, 950, 1066
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 527, 962
MspI CCGG 5 cut(s) 61, 80, 122, 208, 263
MspR9I CCNGG 5 cut(s) 209, 263, 317, 457, 500
MunI CAATTG 1 cut(s) 702
MvaI CCWGG 3 cut(s) 317, 457, 500
MwoI GCNNNNNNNGC 2 cut(s) 593, 791
NciI CCSGG 2 cut(s) 209, 263
NcoI CCATGG 1 cut(s) 514
NdeII GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
NlaIII CATG 7 cut(s) 259, 349, 437, 518, 683, 776, 826
NlaIV GGNNCC 5 cut(s) 29, 213, 362, 461, 812
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 52, 542
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 1 cut(s) 259
PagI TCATGA 1 cut(s) 345
PciI ACATGT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 2 cut(s) 323, 874
PflMI CCANNNNNTGG 1 cut(s) 370
PinAI ACCGGT 1 cut(s) 60
PkrI GCNGC 6 cut(s) 280, 595, 718, 961, 986, 1018
PleI GAGTC 2 cut(s) 549, 599
PpsI GAGTC 2 cut(s) 549, 599
PscI ACATGT 1 cut(s) 255
Psp6I CCWGG 3 cut(s) 315, 455, 498
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 3 cut(s) 315, 455, 498
PspN4I GGNNCC 5 cut(s) 29, 213, 362, 461, 812
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 2 cut(s) 459, 810
PvuII CAGCTG 2 cut(s) 527, 962
RsaI GTAC 2 cut(s) 260, 708
RsaNI GTAC 2 cut(s) 259, 707
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 4 cut(s) 624, 864, 950, 1066
SatI GCNGC 6 cut(s) 279, 594, 717, 960, 985, 1017
Sau3AI GATC 9 cut(s) 246, 409, 426, 459, 471, 667, 675, 741, 810
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 2 cut(s) 550, 599
ScrFI CCNGG 5 cut(s) 209, 263, 317, 457, 500
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 4 cut(s) 542, 692, 772, 1003
SgrAI CRCCGGYG 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 771
Sse9I AATT 4 cut(s) 653, 702, 865, 972
SsiI CCGC 3 cut(s) 215, 281, 386
StyD4I CCNGG 5 cut(s) 207, 261, 315, 455, 498
StyI CCWWGG 3 cut(s) 333, 514, 802
TaaI ACNGT 5 cut(s) 156, 301, 554, 846, 899
TaiI ACGT 2 cut(s) 372, 498
TaqI TCGA 3 cut(s) 598, 662, 732
TasI AATT 4 cut(s) 653, 702, 865, 972
TfiI GAWTC 2 cut(s) 323, 874
Tru1I TTAA 4 cut(s) 624, 864, 950, 1066
Tru9I TTAA 4 cut(s) 624, 864, 950, 1066
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 2 cut(s) 52, 542
TseI GCWGC 6 cut(s) 278, 593, 716, 959, 984, 1016
Tsp45I GTSAC 2 cut(s) 52, 542
TspDTI ATGAA 2 cut(s) 626, 789
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 370
XagI CCTNNNNNAGG 1 cut(s) 1053
XapI RAATTY 1 cut(s) 653
XceI RCATGY 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.