Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013755

Physical Location & Seq

Genomic Coordinates Reverse (-)

3262696 .. 3265375

Gene Structure 2680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTTGCATTAGTCATTGATCATTGTGCTGAATATGAACTCGCTCGTCGTCTTAGAGTTGAGAATGAATATGTCCTGTCAGATCAACAAGCTTTCCATTATCTGGGAAGGCAGTTGACCAGGTACTCTTTACCTTCTGGGTGCTGTGTATCTGACCAGAGACTGTGTCTAGAAAGATGTTGCCTCCGAGTCTCTGACTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGTGCCGCTATAGCATATGGGTCTCTTCTTCTTCAAGGTGTTGAAGTCCCAGAATCTGTGATGAACTTGACTTCAAAAAGGGGTTCTTTAGCCAGAAAGGCAAGAAAGAATGCAGAAAGCCTTGTAAGAGACCAGGCAGGAATGGCAAGAGAGCGGTTTCAGATCGCTGCAAAAGCAGGATGTGATCTTGGACTGAAATGGTTGGAAAGACTTGACGAGGAAGAGAAGCATCTATTGACTGAAAATGAAACGGTAGAAAATGCCCAAGAAGGAAAGAAGGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

174

Amino Acids

19.68

Weight (kDa)

6.94

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013755)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088761 RchiOBHm_Chr2g0088921 RchiOBHm_Chr3g0491871 RchiOBHm_Chr4g0406881 RchiOBHm_Chr5g0066691 RchiOBHm_Chr7g0205611
rosa_laevigata	RLG00000033514
rosa_multiflora	Rmu_sc0005659.1_g000019
rosa_roxburghii	Rroxscaffold_1G00021110 Rroxscaffold_2G00116730 Rroxscaffold_2G00116900 Rroxscaffold_6G00395530 Rroxscaffold_7G00187800
rosa_rugosa	Rorug03G0261400 Rorug03G0261500 Rorug05G0117700
rosa_samantha	Rh3AG300300 Rh3DG311900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	391
AciI	CCGC	2 cut(s)	243, 391
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	272, 281, 312
AjnI	CCWGG	2 cut(s)	119, 369
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	4 cut(s)	154, 196, 264, 360
AlwNI	CAGNNNCTG	2 cut(s)	163, 293
ApeKI	GCWGC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	121, 371
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	4 cut(s)	154, 196, 264, 360
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	243, 405
BlsI	GCNGC	2 cut(s)	244, 406
Bme1390I	CCNGG	2 cut(s)	121, 371
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	121, 371
BmsI	GCATC	2 cut(s)	227, 475
BsaI	GGTCTC	2 cut(s)	264, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	121, 371
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	243, 269
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	4 cut(s)	154, 196, 264, 360
BsmFI	GGGAC	2 cut(s)	243, 269
BsmI	GAATGC	1 cut(s)	352
Bso31I	GGTCTC	2 cut(s)	264, 360
Bsp143I	GATC	4 cut(s)	19, 82, 399, 421
BspACI	CCGC	2 cut(s)	243, 391
BspLI	GGNNCC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	264, 360
BsrBI	CCGCTC	1 cut(s)	391
BssMI	GATC	4 cut(s)	19, 82, 399, 421
Bst2UI	CCWGG	2 cut(s)	121, 371
Bst4CI	ACNGT	2 cut(s)	165, 490
Bst6I	CTCTTC	2 cut(s)	267, 453
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	422
BstKTI	GATC	4 cut(s)	22, 85, 402, 424
BstMAI	GTCTC	4 cut(s)	154, 196, 264, 360
BstMBI	GATC	4 cut(s)	19, 82, 399, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 248, 335, 380, 410
BstNI	CCWGG	2 cut(s)	121, 371
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	119, 369
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	422
CaiI	CAGNNNCTG	2 cut(s)	163, 293
CsiI	ACCWGGT	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	3 cut(s)	92, 329, 357
CviKI_1	RGCY	3 cut(s)	92, 329, 357
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	4 cut(s)	21, 84, 401, 423
DpnII	GATC	4 cut(s)	19, 82, 399, 421
Eam1104I	CTCTTC	2 cut(s)	267, 453
EarI	CTCTTC	2 cut(s)	267, 453
Eco31I	GGTCTC	2 cut(s)	264, 360
EcoRII	CCWGG	2 cut(s)	119, 369
FaeI	CATG	1 cut(s)	236
FaiI	YATR	8 cut(s)	36, 72, 202, 213, 234, 248, 253, 255
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FaqI	GGGAC	2 cut(s)	243, 269
FatI	CATG	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	243, 405
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	2 cut(s)	243, 405
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	2 cut(s)	243, 405
Hin1II	CATG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	189, 290
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	6 cut(s)	82, 154, 188, 196, 223, 399
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	5 cut(s)	102, 144, 220, 500, 508
HpyCH4III	ACNGT	2 cut(s)	165, 490
HpyCH4V	TGCA	3 cut(s)	8, 350, 407
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 248, 335, 380, 410
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 82, 399, 421
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	227, 475
MabI	ACCWGGT	1 cut(s)	119
MaeI	CTAG	1 cut(s)	170
MalI	GATC	4 cut(s)	21, 84, 401, 423
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	4 cut(s)	19, 82, 399, 421
MboII	GAAGA	4 cut(s)	254, 257, 260, 470
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	2 cut(s)	194, 448
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	121, 371
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	121, 371
MwoI	GCNNNNNNNGC	5 cut(s)	242, 248, 335, 380, 410
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	4 cut(s)	19, 82, 399, 421
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	236
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	244, 406
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	119, 369
PspGI	CCWGG	2 cut(s)	119, 369
PspN4I	GGNNCC	1 cut(s)	241
PstNI	CAGNNNCTG	2 cut(s)	163, 293
PsyI	GACNNNGTC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	2 cut(s)	243, 405
Sau3AI	GATC	4 cut(s)	19, 82, 399, 421
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	121, 371
SetI	ASST	5 cut(s)	94, 125, 136, 277, 519
SexAI	ACCWGGT	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	227, 475
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	237
SsiI	CCGC	2 cut(s)	243, 391
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	119, 369
TaaI	ACNGT	2 cut(s)	165, 490
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	51, 81, 314, 498
Tth111I	GACNNNGTC	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.