Rroxscaffold_1G00021110

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013755
Physical Location & Seq
Forward (+)
25835108 .. 25838613
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021110.1

Sequence Viewer

Length: 282 bp
ATGAAGATCAAGGACGATAGTGCCATGGCGGTGCCCTCCCGCAGTCGACTGGGTCTTTGCATCATTCTTGGCTCTATGGGAGCAAGAAAGATTGCAGAAAGCCTCGTGAGAGACCAGGCAGAAATGGCAAGAGAGCGGTTTCAGATCGCTACAAAAGCAGGATTTGATCTTGGACTGAGGTGGTTGGAAAGACTTGAACAGGAAGAGAAACATTTATTGCCCGGAAATAAATGGCAGAACATGCCCAAGGACGAAAGAAGGCCTGGTAATCGTTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

10.11

Isoelectric Point (pI)

69.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 46
AciI CCGC 3 cut(s) 29, 40, 136
AgsI TTSAA 2 cut(s) 197, 276
AjnI CCWGG 2 cut(s) 114, 262
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AsuC2I CCSGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 116, 264
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 116, 222, 264
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 3 cut(s) 116, 222, 264
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 24, 246
Bse1I ACTGG 1 cut(s) 54
BseBI CCWGG 2 cut(s) 116, 264
BseDI CCNNGG 2 cut(s) 24, 246
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 36
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 6, 144, 166
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 3 cut(s) 29, 40, 136
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 24, 246
BssMI GATC 3 cut(s) 6, 144, 166
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 24, 246
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 116, 264
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 24
BstKTI GATC 3 cut(s) 9, 147, 169
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 6, 144, 166
BstMWI GCNNNNNNNGC 3 cut(s) 125, 155, 241
BstNI CCWGG 2 cut(s) 116, 264
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 3 cut(s) 114, 220, 262
BstSLI GKGCMC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 24
CviAII CATG 2 cut(s) 25, 241
CviJI RGCY 3 cut(s) 72, 102, 262
CviKI_1 RGCY 3 cut(s) 72, 102, 262
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 8, 146, 168
DpnII GATC 3 cut(s) 6, 144, 166
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 24, 246
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 114, 262
EcoT14I CCWWGG 2 cut(s) 24, 246
ErhI CCWWGG 2 cut(s) 24, 246
FaeI CATG 2 cut(s) 28, 244
FaiI YATR 3 cut(s) 26, 77, 242
FatI CATG 2 cut(s) 24, 240
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 222
Hin1II CATG 2 cut(s) 28, 244
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 106, 276
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 60, 95
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 155, 241
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 28, 244
Kzo9I GATC 3 cut(s) 6, 144, 166
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 8 cut(s) 35, 101, 128, 144, 185, 235, 249, 276
LweI GCATC 1 cut(s) 69
MalI GATC 3 cut(s) 8, 146, 168
MbiI CCGCTC 1 cut(s) 136
MboI GATC 3 cut(s) 6, 144, 166
MboII GAAGA 2 cut(s) 16, 215
MhlI GDGCHC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 46, 113, 171
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 3 cut(s) 116, 222, 264
MvaI CCWGG 2 cut(s) 116, 264
MwoI GCNNNNNNNGC 3 cut(s) 125, 155, 241
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 24
NdeII GATC 3 cut(s) 6, 144, 166
NlaIII CATG 2 cut(s) 28, 244
NlaIV GGNNCC 1 cut(s) 33
NspI RCATGY 1 cut(s) 244
PceI AGGCCT 1 cut(s) 262
PflFI GACNNNGTC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 114, 262
PspGI CCWGG 2 cut(s) 114, 262
PspN4I GGNNCC 1 cut(s) 33
PsyI GACNNNGTC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 29
SalI GTCGAC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 6, 144, 166
ScrFI CCNGG 3 cut(s) 116, 222, 264
SduI GDGCHC 1 cut(s) 36
SetI ASST 1 cut(s) 182
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 29
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 3 cut(s) 29, 40, 136
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 114, 220, 262
StyI CCWWGG 2 cut(s) 24, 246
TaqI TCGA 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 51
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.