Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005659.1

Orthogroup ID

OG0013755

Physical Location & Seq

Genomic Coordinates Reverse (-)

85474 .. 89328

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005659.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaaggttgtcgccgcatatttgctcactattttgggcgtcaacgccagcctctccgccaaggacttgaagactgttttcgcctccgatgttgaagtcccagaatctgtgatgaacttgacttcgaaaaggggttctttagcaagaaagaatgcagaaagcattgtaagagaccaggcaggaatggcaagagagtggtttcagatcgctgcaaaagcaggatgtgatcttggacagaaatggttggaaagacttgaagaggaagagaatcatctattgaccgaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sel1

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

5.17

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013755)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088761 RchiOBHm_Chr2g0088921 RchiOBHm_Chr3g0491871 RchiOBHm_Chr4g0406881 RchiOBHm_Chr5g0066691 RchiOBHm_Chr7g0205611
rosa_laevigata	RLG00000033514
rosa_multiflora	Rmu_sc0005659.1_g000019
rosa_roxburghii	Rroxscaffold_1G00021110 Rroxscaffold_2G00116730 Rroxscaffold_2G00116900 Rroxscaffold_6G00395530 Rroxscaffold_7G00187800
rosa_rugosa	Rorug03G0261400 Rorug03G0261500 Rorug05G0117700
rosa_samantha	Rh3AG300300 Rh3DG311900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 57
AcyI	GRCGYC	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	70, 95, 257
AjnI	CCWGG	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	15, 210
BlsI	GCNGC	2 cut(s)	16, 211
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	204, 226
BspACI	CCGC	2 cut(s)	15, 57
BspT104I	TTCGAA	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	204, 226
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	252, 258
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	207, 229
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	204, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 215
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	107
CseI	GACGC	1 cut(s)	28
CviJI	RGCY	1 cut(s)	51
CviKI_1	RGCY	1 cut(s)	51
DpnI	GATC	2 cut(s)	206, 228
DpnII	GATC	2 cut(s)	204, 226
Eam1104I	CTCTTC	2 cut(s)	252, 258
EarI	CTCTTC	2 cut(s)	252, 258
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaiI	YATR	1 cut(s)	19
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	15, 210
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	15, 210
GluI	GCNGC	2 cut(s)	15, 210
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	104, 268
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	88, 204
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	155, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 215
Hsp92I	GRCGYC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	204, 226
LpnPI	CCDG	6 cut(s)	61, 114, 161, 165, 188, 204
Lsp1109I	GCAGC	1 cut(s)	196
MalI	GATC	2 cut(s)	206, 228
MboI	GATC	2 cut(s)	204, 226
MboII	GAAGA	3 cut(s)	82, 269, 275
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	62, 94, 253
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	185, 215
NdeII	GATC	2 cut(s)	204, 226
NspV	TTCGAA	1 cut(s)	125
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	104, 268
PkrI	GCNGC	2 cut(s)	16, 211
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	107
SatI	GCNGC	2 cut(s)	15, 210
Sau3AI	GATC	2 cut(s)	204, 226
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	125
SsiI	CCGC	2 cut(s)	15, 57
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	125
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	104, 268
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	17, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.