Rorug03G0261400

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013755
Physical Location & Seq
Forward (+)
25156891 .. 25158324
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0261400.1

Sequence Viewer

Length: 516 bp
ATGATCTGGCCACTGACCACCCGCTCCACATCCGGGTCACCGTCGAACGCCGATCGCCAAATACCCACACCTGCGTCGCTGCTTGAGAAGAAACAAGAGTCGTACCCAGCCCAGTCCGATGAAGATAGGCCAAAGCCGGGAGCCTCCAGATCCCAAGAGCCCGTCCGGCAACACCCGCCGGTCGTCGATGAGGCATGGAGCCACAATCAACGCGGGAGCGCCGCCGGACAGACTGCAGAATGTCCTGTGCTTTTTCCAAACCCTATTTCGCTCGCCTGTTTTCTCGGAGCAGGATTTCAAAGTCATACATACGAGATAGAGTTTACAATATCTATTATGAAAAATACAACGAAGCTTGAGACTTTGGTGATCGACCCGTTTGGAAAAACTTATATCGATGGAGTGTTTAGGGATGTTATCAGCATATATACTCTAAAATCTATGCCTGATTGCCTGAACATCCATCTTGGGAGGAAGAACGCGGAATATTATGGGAAGAAAAACGCAGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

171

Amino Acids

18.93

Weight (kDa)

6.43

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 2 cut(s) 213, 482
AciI CCGC 5 cut(s) 22, 176, 213, 222, 482
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 8
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 33, 137
AgsI TTSAA 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 250, 282
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 144
AoxI GGCC 2 cut(s) 8, 128
ApeKI GCWGC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 221
AsuC2I CCSGG 2 cut(s) 34, 138
AsuHPI GGTGA 2 cut(s) 30, 379
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 392, 471
BcnI CCSGG 2 cut(s) 34, 138
BcoDI GTCTC 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 80, 222
BlsI GCNGC 2 cut(s) 81, 223
Bme1390I CCNGG 2 cut(s) 34, 138
BmiI GGNNCC 2 cut(s) 142, 200
BmrFI CCNGG 2 cut(s) 34, 138
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 104, 377
BpuMI CCSGG 2 cut(s) 34, 138
Bsa29I ATCGAT 1 cut(s) 396
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 137
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 396
BseGI GGATG 3 cut(s) 29, 418, 459
BseLI CCNNNNNNNGG 2 cut(s) 33, 137
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 213, 482
Bsh1285I CGRYCG 2 cut(s) 55, 183
BshFI GGCC 2 cut(s) 10, 130
BshVI ATCGAT 1 cut(s) 396
BsiEI CGRYCG 2 cut(s) 55, 183
BsiSI CCGG 5 cut(s) 33, 137, 166, 179, 225
BslI CCNNNNNNNGG 2 cut(s) 33, 137
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 2 cut(s) 10, 130
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 4 cut(s) 3, 52, 149, 369
BspACI CCGC 5 cut(s) 22, 176, 213, 222, 482
BspANI GGCC 2 cut(s) 10, 130
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 2 cut(s) 213, 482
BspLI GGNNCC 2 cut(s) 142, 200
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 4 cut(s) 3, 52, 149, 369
Bst4CI ACNGT 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 36
BstF5I GGATG 3 cut(s) 29, 418, 459
BstFNI CGCG 2 cut(s) 213, 482
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 4 cut(s) 6, 55, 152, 372
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 3, 52, 149, 369
BstMCI CGRYCG 2 cut(s) 55, 183
BstMWI GCNNNNNNNGC 2 cut(s) 166, 175
BstPI GGTNACC 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 32, 136
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 2 cut(s) 213, 482
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 2 cut(s) 10, 130
BsuTUI ATCGAT 1 cut(s) 396
BtsCI GGATG 3 cut(s) 29, 418, 459
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 195
CviJI RGCY 8 cut(s) 10, 110, 130, 136, 143, 160, 201, 355
CviKI_1 RGCY 8 cut(s) 10, 110, 130, 136, 143, 160, 201, 355
CviQI GTAC 1 cut(s) 103
DpnI GATC 4 cut(s) 5, 54, 151, 371
DpnII GATC 4 cut(s) 3, 52, 149, 369
EaeI YGGCCR 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 198
FatI CATG 1 cut(s) 194
FauI CCCGC 3 cut(s) 29, 183, 206
Fnu4HI GCNGC 2 cut(s) 80, 222
FokI GGATG 3 cut(s) 16, 425, 446
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 80, 222
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 80, 222
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 2 cut(s) 10, 130
HapII CCGG 5 cut(s) 33, 137, 166, 179, 225
HgaI GACGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 98
HpaII CCGG 5 cut(s) 33, 137, 166, 179, 225
HphI GGTGA 2 cut(s) 30, 379
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 2 cut(s) 118, 287
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 324
Hpy99I CGWCG 3 cut(s) 46, 79, 188
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 175
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 4 cut(s) 3, 52, 149, 369
LmnI GCTCC 5 cut(s) 29, 140, 198, 216, 287
Lsp1109I GCAGC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 36
MalI GATC 4 cut(s) 5, 54, 151, 371
MbiI CCGCTC 1 cut(s) 24
MboI GATC 4 cut(s) 3, 52, 149, 369
MboII GAAGA 4 cut(s) 100, 134, 487, 508
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 10
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 154, 184, 465
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
Msp20I TGGCCA 1 cut(s) 10
MspI CCGG 5 cut(s) 33, 137, 166, 179, 225
MspR9I CCNGG 2 cut(s) 34, 138
MvnI CGCG 2 cut(s) 213, 482
MwoI GCNNNNNNNGC 2 cut(s) 166, 175
NciI CCSGG 2 cut(s) 34, 138
NdeII GATC 4 cut(s) 3, 52, 149, 369
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 2 cut(s) 142, 200
NmuCI GTSAC 1 cut(s) 36
PaqCI CACCTGC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 81, 223
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 142, 200
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 149
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 2 cut(s) 80, 222
Sau3AI GATC 4 cut(s) 3, 52, 149, 369
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 34, 138
SduI GDGCHC 1 cut(s) 162
SetI ASST 2 cut(s) 73, 357
SfcI CTRYAG 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 83, 356
SmoI CTYRAG 2 cut(s) 83, 356
SsiI CCGC 5 cut(s) 22, 176, 213, 222, 482
SspI AATATT 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 32, 136
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 44, 186, 372, 396
TauI GCSGC 1 cut(s) 224
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 135, 353
TspRI CASTG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.