Sel1-like repeats.
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0088761 RchiOBHm_Chr2g0088921 RchiOBHm_Chr3g0491871 RchiOBHm_Chr4g0406881 RchiOBHm_Chr5g0066691 RchiOBHm_Chr7g0205611 |
| rosa_laevigata | RLG00000033514 |
| rosa_multiflora | Rmu_sc0005659.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00021110 Rroxscaffold_2G00116730 Rroxscaffold_2G00116900 Rroxscaffold_6G00395530 Rroxscaffold_7G00187800 |
| rosa_rugosa | Rorug03G0261400 Rorug03G0261500 Rorug05G0117700 |
| rosa_samantha | Rh3AG300300 Rh3DG311900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 4 |
| AgsI | TTSAA | 3 cut(s) | 50, 59, 221 |
| AjnI | CCWGG | 1 cut(s) | 138 |
| AluBI | AGCT | 1 cut(s) | 23 |
| AluI | AGCT | 1 cut(s) | 23 |
| Alw26I | GTCTC | 1 cut(s) | 129 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 71 |
| ApeKI | GCWGC | 2 cut(s) | 20, 173 |
| AsuII | TTCGAA | 1 cut(s) | 89 |
| BbvI | GCAGC | 2 cut(s) | 32, 160 |
| BciT130I | CCWGG | 1 cut(s) | 140 |
| BcoDI | GTCTC | 1 cut(s) | 129 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| BisI | GCNGC | 2 cut(s) | 21, 174 |
| BlsI | GCNGC | 2 cut(s) | 22, 175 |
| Bme1390I | CCNGG | 1 cut(s) | 140 |
| BmrFI | CCNGG | 1 cut(s) | 140 |
| Bpu14I | TTCGAA | 1 cut(s) | 89 |
| BsaI | GGTCTC | 1 cut(s) | 129 |
| BseBI | CCWGG | 1 cut(s) | 140 |
| BseGI | GGATG | 1 cut(s) | 191 |
| BseXI | GCAGC | 2 cut(s) | 32, 160 |
| BsgI | GTGCAG | 1 cut(s) | 39 |
| BslFI | GGGAC | 2 cut(s) | 21, 47 |
| BsmAI | GTCTC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 2 cut(s) | 21, 47 |
| BsmI | GAATGC | 1 cut(s) | 121 |
| Bso31I | GGTCTC | 1 cut(s) | 129 |
| Bsp119I | TTCGAA | 1 cut(s) | 89 |
| Bsp143I | GATC | 2 cut(s) | 168, 190 |
| BspACI | CCGC | 1 cut(s) | 4 |
| BspT104I | TTCGAA | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 129 |
| BssMI | GATC | 2 cut(s) | 168, 190 |
| Bst2UI | CCWGG | 1 cut(s) | 140 |
| Bst6I | CTCTTC | 2 cut(s) | 216, 222 |
| BstBI | TTCGAA | 1 cut(s) | 89 |
| BstF5I | GGATG | 1 cut(s) | 191 |
| BstKTI | GATC | 2 cut(s) | 171, 193 |
| BstMAI | GTCTC | 1 cut(s) | 129 |
| BstMBI | GATC | 2 cut(s) | 168, 190 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 20, 26, 149, 179 |
| BstNI | CCWGG | 1 cut(s) | 140 |
| BstNSI | RCATGY | 1 cut(s) | 14 |
| BstSCI | CCNGG | 1 cut(s) | 138 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 2 cut(s) | 32, 160 |
| BtsCI | GGATG | 1 cut(s) | 191 |
| CaiI | CAGNNNCTG | 1 cut(s) | 71 |
| CviAII | CATG | 1 cut(s) | 11 |
| CviJI | RGCY | 1 cut(s) | 23 |
| CviKI_1 | RGCY | 1 cut(s) | 23 |
| DpnI | GATC | 2 cut(s) | 170, 192 |
| DpnII | GATC | 2 cut(s) | 168, 190 |
| Eam1104I | CTCTTC | 2 cut(s) | 216, 222 |
| EarI | CTCTTC | 2 cut(s) | 216, 222 |
| Eco31I | GGTCTC | 1 cut(s) | 129 |
| EcoRII | CCWGG | 1 cut(s) | 138 |
| FaeI | CATG | 1 cut(s) | 14 |
| FaiI | YATR | 4 cut(s) | 12, 26, 31, 33 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 85, 117 |
| FaqI | GGGAC | 2 cut(s) | 21, 47 |
| FatI | CATG | 1 cut(s) | 10 |
| FauNDI | CATATG | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 174 |
| FokI | GGATG | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 174 |
| GluI | GCNGC | 2 cut(s) | 21, 174 |
| Hin1II | CATG | 1 cut(s) | 14 |
| HinfI | GANTC | 2 cut(s) | 68, 232 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 3 cut(s) | 20, 119, 176 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 20, 26, 149, 179 |
| Hsp92II | CATG | 1 cut(s) | 14 |
| Kzo9I | GATC | 2 cut(s) | 168, 190 |
| LpnPI | CCDG | 5 cut(s) | 78, 125, 129, 152, 168 |
| Lsp1109I | GCAGC | 2 cut(s) | 32, 160 |
| MalI | GATC | 2 cut(s) | 170, 192 |
| MboI | GATC | 2 cut(s) | 168, 190 |
| MboII | GAAGA | 4 cut(s) | 35, 38, 233, 239 |
| MmeI | TCCRAC | 1 cut(s) | 189 |
| MnlI | CCTC | 1 cut(s) | 217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| MspR9I | CCNGG | 1 cut(s) | 140 |
| Mva1269I | GAATGC | 1 cut(s) | 121 |
| MvaI | CCWGG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 20, 26, 149, 179 |
| NdeI | CATATG | 1 cut(s) | 31 |
| NdeII | GATC | 2 cut(s) | 168, 190 |
| NlaIII | CATG | 1 cut(s) | 14 |
| NspI | RCATGY | 1 cut(s) | 14 |
| NspV | TTCGAA | 1 cut(s) | 89 |
| PctI | GAATGC | 1 cut(s) | 121 |
| PfeI | GAWTC | 2 cut(s) | 68, 232 |
| PkrI | GCNGC | 2 cut(s) | 22, 175 |
| Psp6I | CCWGG | 1 cut(s) | 138 |
| PspGI | CCWGG | 1 cut(s) | 138 |
| PstNI | CAGNNNCTG | 1 cut(s) | 71 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SatI | GCNGC | 2 cut(s) | 21, 174 |
| Sau3AI | GATC | 2 cut(s) | 168, 190 |
| ScrFI | CCNGG | 1 cut(s) | 140 |
| SetI | ASST | 1 cut(s) | 25 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SfuI | TTCGAA | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SsiI | CCGC | 1 cut(s) | 4 |
| StyD4I | CCNGG | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 89 |
| TfiI | GAWTC | 2 cut(s) | 68, 232 |
| TseI | GCWGC | 2 cut(s) | 20, 173 |
| TspDTI | ATGAA | 1 cut(s) | 92 |
| XceI | RCATGY | 1 cut(s) | 14 |