Sel1-like repeats.
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0088761 RchiOBHm_Chr2g0088921 RchiOBHm_Chr3g0491871 RchiOBHm_Chr4g0406881 RchiOBHm_Chr5g0066691 RchiOBHm_Chr7g0205611 |
| rosa_laevigata | RLG00000033514 |
| rosa_multiflora | Rmu_sc0005659.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00021110 Rroxscaffold_2G00116730 Rroxscaffold_2G00116900 Rroxscaffold_6G00395530 Rroxscaffold_7G00187800 |
| rosa_rugosa | Rorug03G0261400 Rorug03G0261500 Rorug05G0117700 |
| rosa_samantha | Rh3AG300300 Rh3DG311900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 845 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2598 |
| Acc36I | ACCTGC | 1 cut(s) | 1378 |
| AccB1I | GGYRCC | 1 cut(s) | 2699 |
| AccII | CGCG | 1 cut(s) | 1276 |
| AciI | CCGC | 6 cut(s) | 351, 562, 681, 1708, 2149, 2745 |
| AclWI | GGATC | 6 cut(s) | 365, 958, 1226, 1440, 2479, 2749 |
| AcoI | YGGCCR | 1 cut(s) | 206 |
| AcsI | RAATTY | 6 cut(s) | 123, 1996, 2788, 2885, 3136, 3198 |
| AcuI | CTGAAG | 5 cut(s) | 254, 470, 611, 1457, 3023 |
| AdeI | CACNNNGTG | 1 cut(s) | 215 |
| AfaI | GTAC | 6 cut(s) | 990, 1578, 1765, 1900, 2566, 2622 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 176, 274, 680, 2402, 2857 |
| AflIII | ACRYGT | 1 cut(s) | 1274 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1952, 2403 |
| AjnI | CCWGG | 5 cut(s) | 222, 543, 1248, 1497, 2421 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2067, 2099 |
| Alw21I | GWGCWC | 4 cut(s) | 90, 888, 1798, 3234 |
| Alw26I | GTCTC | 7 cut(s) | 278, 325, 1075, 1265, 1873, 2628, 2715 |
| AlwI | GGATC | 6 cut(s) | 365, 958, 1226, 1440, 2479, 2749 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2936 |
| Ama87I | CYCGRG | 1 cut(s) | 2718 |
| AoxI | GGCC | 8 cut(s) | 27, 76, 206, 1046, 1087, 1093, 2848, 2944 |
| ApoI | RAATTY | 6 cut(s) | 123, 1996, 2788, 2885, 3136, 3198 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1264, 1296, 2246, 2278, 2726, 2758 |
| AseI | ATTAAT | 2 cut(s) | 386, 1473 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 126, 2492 |
| AspLEI | GCGC | 3 cut(s) | 725, 2783, 2925 |
| AspS9I | GGNCC | 7 cut(s) | 28, 77, 614, 1046, 2175, 2848, 2944 |
| AsuC2I | CCSGG | 1 cut(s) | 2555 |
| AsuII | TTCGAA | 1 cut(s) | 1147 |
| AsuNHI | GCTAGC | 1 cut(s) | 1645 |
| AvaI | CYCGRG | 1 cut(s) | 2718 |
| AvaII | GGWCC | 2 cut(s) | 614, 2175 |
| AxyI | CCTNAGG | 1 cut(s) | 81 |
| BaeGI | GKGCMC | 1 cut(s) | 2024 |
| BanI | GGYRCC | 1 cut(s) | 2699 |
| BanII | GRGCYC | 4 cut(s) | 90, 888, 2719, 3234 |
| BauI | CACGAG | 4 cut(s) | 2270, 2568, 2628, 2690 |
| BbsI | GAAGAC | 2 cut(s) | 1363, 3125 |
| Bbv12I | GWGCWC | 4 cut(s) | 90, 888, 1798, 3234 |
| BceAI | ACGGC | 3 cut(s) | 42, 2835, 3165 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1449, 1483, 2681, 2715 |
| BciT130I | CCWGG | 5 cut(s) | 224, 545, 1250, 1499, 2423 |
| BclI | TGATCA | 1 cut(s) | 814 |
| BcnI | CCSGG | 1 cut(s) | 2555 |
| BcoDI | GTCTC | 7 cut(s) | 278, 325, 1075, 1265, 1873, 2628, 2715 |
| BfaI | CTAG | 6 cut(s) | 798, 1412, 1428, 1646, 2132, 3029 |
| BfmI | CTRYAG | 6 cut(s) | 342, 718, 1960, 2441, 2576, 2748 |
| BfoI | RGCGCY | 2 cut(s) | 726, 2784 |
| BfuAI | ACCTGC | 1 cut(s) | 1378 |
| BglII | AGATCT | 1 cut(s) | 1593 |
| Bme1390I | CCNGG | 6 cut(s) | 224, 545, 1250, 1499, 2423, 2555 |
| Bme18I | GGWCC | 2 cut(s) | 614, 2175 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1952, 2403 |
| BmeT110I | CYCGRG | 1 cut(s) | 2718 |
| BmgT120I | GGNCC | 7 cut(s) | 28, 77, 614, 1046, 2175, 2848, 2944 |
| BmiI | GGNNCC | 4 cut(s) | 615, 1047, 2701, 2849 |
| BmrFI | CCNGG | 6 cut(s) | 224, 545, 1250, 1499, 2423, 2555 |
| BmtI | GCTAGC | 1 cut(s) | 1649 |
| BoxI | GACNNNNGTC | 1 cut(s) | 351 |
| BpiI | GAAGAC | 2 cut(s) | 1363, 3125 |
| BpmI | CTGGAG | 2 cut(s) | 1440, 1536 |
| Bpu14I | TTCGAA | 1 cut(s) | 1147 |
| BpuEI | CTTGAG | 7 cut(s) | 494, 860, 1097, 1323, 2876, 2994, 3070 |
| BpuMI | CCSGG | 1 cut(s) | 2555 |
| Bsa29I | ATCGAT | 1 cut(s) | 902 |
| BsaAI | YACGTR | 1 cut(s) | 2620 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3150 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 176, 274, 680, 2402, 2857 |
| Bse118I | RCCGGY | 1 cut(s) | 74 |
| Bse1I | ACTGG | 5 cut(s) | 662, 874, 1519, 1846, 2215 |
| Bse21I | CCTNAGG | 1 cut(s) | 81 |
| Bse3DI | GCAATG | 6 cut(s) | 99, 315, 1293, 1996, 2448, 3115 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3150 |
| BseBI | CCWGG | 5 cut(s) | 224, 545, 1250, 1499, 2423 |
| BseCI | ATCGAT | 1 cut(s) | 902 |
| BseJI | GATNNNNATC | 1 cut(s) | 3150 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 176, 274, 680, 2402, 2857 |
| BseMI | GCAATG | 6 cut(s) | 99, 315, 1293, 1996, 2448, 3115 |
| BseMII | CTCAG | 7 cut(s) | 95, 336, 639, 2346, 2445, 3138, 3190 |
| BseNI | ACTGG | 5 cut(s) | 662, 874, 1519, 1846, 2215 |
| BseRI | GAGGAG | 4 cut(s) | 129, 1746, 2723, 3242 |
| BseSI | GKGCMC | 1 cut(s) | 2024 |
| BseYI | CCCAGC | 1 cut(s) | 821 |
| BsgI | GTGCAG | 2 cut(s) | 1406, 2235 |
| Bsh1236I | CGCG | 1 cut(s) | 1276 |
| BshFI | GGCC | 8 cut(s) | 29, 78, 208, 1048, 1089, 1095, 2850, 2946 |
| BshNI | GGYRCC | 1 cut(s) | 2699 |
| BshVI | ATCGAT | 1 cut(s) | 902 |
| BsiHKAI | GWGCWC | 4 cut(s) | 90, 888, 1798, 3234 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2718 |
| BsiSI | CCGG | 2 cut(s) | 75, 2554 |
| BslFI | GGGAC | 3 cut(s) | 977, 1891, 2377 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 176, 274, 680, 2402, 2857 |
| BsmAI | GTCTC | 7 cut(s) | 278, 325, 1075, 1265, 1873, 2628, 2715 |
| BsmBI | CGTCTC | 2 cut(s) | 278, 1265 |
| BsmFI | GGGAC | 3 cut(s) | 977, 1891, 2377 |
| BsmI | GAATGC | 3 cut(s) | 935, 2409, 2494 |
| BsnI | GGCC | 8 cut(s) | 29, 78, 208, 1048, 1089, 1095, 2850, 2946 |
| BsoBI | CYCGRG | 1 cut(s) | 2718 |
| Bsp119I | TTCGAA | 1 cut(s) | 1147 |
| Bsp1286I | GDGCHC | 6 cut(s) | 90, 888, 1798, 2024, 2719, 3234 |
| Bsp1407I | TGTACA | 2 cut(s) | 988, 1576 |
| BspACI | CCGC | 6 cut(s) | 351, 562, 681, 1708, 2149, 2745 |
| BspANI | GGCC | 8 cut(s) | 29, 78, 208, 1048, 1089, 1095, 2850, 2946 |
| BspCNI | CTCAG | 7 cut(s) | 94, 335, 640, 2345, 2446, 3137, 3189 |
| BspDI | ATCGAT | 1 cut(s) | 902 |
| BspFNI | CGCG | 1 cut(s) | 1276 |
| BspHI | TCATGA | 2 cut(s) | 850, 1360 |
| BspLI | GGNNCC | 4 cut(s) | 615, 1047, 2701, 2849 |
| BspMAI | CTGCAG | 3 cut(s) | 722, 2445, 2580 |
| BspMI | ACCTGC | 1 cut(s) | 1378 |
| BspOI | GCTAGC | 1 cut(s) | 1649 |
| BspPI | GGATC | 6 cut(s) | 365, 958, 1226, 1440, 2479, 2749 |
| BspQI | GCTCTTC | 1 cut(s) | 3243 |
| BspT104I | TTCGAA | 1 cut(s) | 1147 |
| BspT107I | GGYRCC | 1 cut(s) | 2699 |
| BsrDI | GCAATG | 6 cut(s) | 99, 315, 1293, 1996, 2448, 3115 |
| BsrFI | RCCGGY | 1 cut(s) | 74 |
| BsrGI | TGTACA | 2 cut(s) | 988, 1576 |
| BsrI | ACTGG | 5 cut(s) | 662, 874, 1519, 1846, 2215 |
| BssAI | RCCGGY | 1 cut(s) | 74 |
| BssSI | CACGAG | 4 cut(s) | 2270, 2568, 2628, 2690 |
| BssT1I | CCWWGG | 6 cut(s) | 303, 617, 1090, 2400, 2776, 2878 |
| Bst2BI | CACGAG | 4 cut(s) | 2270, 2568, 2628, 2690 |
| Bst2UI | CCWGG | 5 cut(s) | 224, 545, 1250, 1499, 2423 |
| Bst4CI | ACNGT | 8 cut(s) | 756, 1581, 1954, 1964, 2357, 2809, 2959, 2974 |
| Bst6I | CTCTTC | 5 cut(s) | 772, 1140, 1339, 1698, 3243 |
| BstAUI | TGTACA | 2 cut(s) | 988, 1576 |
| BstBAI | YACGTR | 1 cut(s) | 2620 |
| BstBI | TTCGAA | 1 cut(s) | 1147 |
| BstC8I | GCNNGC | 9 cut(s) | 562, 1452, 1462, 1643, 1647, 2142, 2146, 2715, 2927 |
| BstDSI | CCRYGG | 2 cut(s) | 3181, 3222 |
| BstFNI | CGCG | 1 cut(s) | 1276 |
| BstH2I | RGCGCY | 2 cut(s) | 726, 2784 |
| BstHHI | GCGC | 3 cut(s) | 725, 2783, 2925 |
| BstMAI | GTCTC | 7 cut(s) | 278, 325, 1075, 1265, 1873, 2628, 2715 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 737, 979, 2019, 2154 |
| BstNI | CCWGG | 5 cut(s) | 224, 545, 1250, 1499, 2423 |
| BstNSI | RCATGY | 2 cut(s) | 1454, 2144 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 351 |
| BstSCI | CCNGG | 6 cut(s) | 222, 543, 1248, 1497, 2421, 2553 |
| BstSFI | CTRYAG | 6 cut(s) | 342, 718, 1960, 2441, 2576, 2748 |
| BstSLI | GKGCMC | 1 cut(s) | 2024 |
| BstSNI | TACGTA | 1 cut(s) | 2620 |
| BstUI | CGCG | 1 cut(s) | 1276 |
| BstV2I | GAAGAC | 2 cut(s) | 1363, 3125 |
| BstX2I | RGATCY | 5 cut(s) | 370, 1432, 1593, 2471, 2754 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 310 |
| BstYI | RGATCY | 5 cut(s) | 370, 1432, 1593, 2471, 2754 |
| Bsu15I | ATCGAT | 1 cut(s) | 902 |
| Bsu36I | CCTNAGG | 1 cut(s) | 81 |
| BsuRI | GGCC | 8 cut(s) | 29, 78, 208, 1048, 1089, 1095, 2850, 2946 |
| BsuTUI | ATCGAT | 1 cut(s) | 902 |
| BtgI | CCRYGG | 2 cut(s) | 3181, 3222 |
| BtsI | GCAGTG | 1 cut(s) | 3098 |
| BtsIMutI | CAGTG | 7 cut(s) | 278, 1224, 1273, 1826, 2970, 3098, 3265 |
| BveI | ACCTGC | 1 cut(s) | 1378 |
| Cac8I | GCNNGC | 9 cut(s) | 562, 1452, 1462, 1643, 1647, 2142, 2146, 2715, 2927 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2936 |
| CciI | TCATGA | 2 cut(s) | 850, 1360 |
| CfoI | GCGC | 3 cut(s) | 725, 2783, 2925 |
| Cfr10I | RCCGGY | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 7 cut(s) | 28, 77, 614, 1046, 2175, 2848, 2944 |
| ClaI | ATCGAT | 1 cut(s) | 902 |
| CseI | GACGC | 4 cut(s) | 49, 295, 1282, 1888 |
| Csp6I | GTAC | 6 cut(s) | 989, 1577, 1764, 1899, 2565, 2621 |
| CviQI | GTAC | 6 cut(s) | 989, 1577, 1764, 1899, 2565, 2621 |
| DraI | TTTAAA | 1 cut(s) | 736 |
| DraIII | CACNNNGTG | 1 cut(s) | 215 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2598 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1952, 2403 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2598 |
| EaeI | YGGCCR | 1 cut(s) | 206 |
| Eam1104I | CTCTTC | 5 cut(s) | 772, 1140, 1339, 1698, 3243 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1952, 2403 |
| EarI | CTCTTC | 5 cut(s) | 772, 1140, 1339, 1698, 3243 |
| Ecl136II | GAGCTC | 3 cut(s) | 88, 886, 3232 |
| Eco105I | TACGTA | 1 cut(s) | 2620 |
| Eco130I | CCWWGG | 6 cut(s) | 303, 617, 1090, 2400, 2776, 2878 |
| Eco24I | GRGCYC | 4 cut(s) | 90, 888, 2719, 3234 |
| Eco32I | GATATC | 2 cut(s) | 496, 1779 |
| Eco47I | GGWCC | 2 cut(s) | 614, 2175 |
| Eco53kI | GAGCTC | 3 cut(s) | 88, 886, 3232 |
| Eco57I | CTGAAG | 5 cut(s) | 254, 470, 611, 1457, 3023 |
| Eco81I | CCTNAGG | 1 cut(s) | 81 |
| Eco88I | CYCGRG | 1 cut(s) | 2718 |
| EcoICRI | GAGCTC | 3 cut(s) | 88, 886, 3232 |
| EcoO109I | RGGNCCY | 2 cut(s) | 614, 2175 |
| EcoRII | CCWGG | 5 cut(s) | 222, 543, 1248, 1497, 2421 |
| EcoRV | GATATC | 2 cut(s) | 496, 1779 |
| EcoT14I | CCWWGG | 6 cut(s) | 303, 617, 1090, 2400, 2776, 2878 |
| EcoT22I | ATGCAT | 2 cut(s) | 733, 937 |
| EcoT38I | GRGCYC | 4 cut(s) | 90, 888, 2719, 3234 |
| ErhI | CCWWGG | 6 cut(s) | 303, 617, 1090, 2400, 2776, 2878 |
| Esp3I | CGTCTC | 2 cut(s) | 278, 1265 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1857, 1889, 2061, 2093 |
| FaqI | GGGAC | 3 cut(s) | 977, 1891, 2377 |
| FauI | CCCGC | 1 cut(s) | 569 |
| FauNDI | CATATG | 4 cut(s) | 577, 1012, 2016, 2371 |
| FbaI | TGATCA | 1 cut(s) | 814 |
| FriOI | GRGCYC | 4 cut(s) | 90, 888, 2719, 3234 |
| FspBI | CTAG | 6 cut(s) | 798, 1412, 1428, 1646, 2132, 3029 |
| GlaI | GCGC | 3 cut(s) | 724, 2782, 2924 |
| GsaI | CCCAGC | 1 cut(s) | 825 |
| GsuI | CTGGAG | 2 cut(s) | 1440, 1536 |
| HaeII | RGCGCY | 2 cut(s) | 726, 2784 |
| HaeIII | GGCC | 8 cut(s) | 29, 78, 208, 1048, 1089, 1095, 2850, 2946 |
| HapII | CCGG | 2 cut(s) | 75, 2554 |
| HgaI | GACGC | 4 cut(s) | 49, 295, 1282, 1888 |
| HhaI | GCGC | 3 cut(s) | 725, 2783, 2925 |
| Hin6I | GCGC | 3 cut(s) | 723, 2781, 2923 |
| HinP1I | GCGC | 3 cut(s) | 723, 2781, 2923 |
| HincII | GTYRAC | 2 cut(s) | 1039, 1057 |
| HindII | GTYRAC | 2 cut(s) | 1039, 1057 |
| HindIII | AAGCTT | 2 cut(s) | 2108, 3035 |
| HinfI | GANTC | 7 cut(s) | 873, 965, 1161, 2222, 2933, 2950, 3161 |
| HpaII | CCGG | 2 cut(s) | 75, 2554 |
| Hpy166II | GTNNAC | 9 cut(s) | 715, 1039, 1057, 1224, 1665, 2075, 2547, 2591, 2773 |
| Hpy8I | GTNNAC | 9 cut(s) | 715, 1039, 1057, 1224, 1665, 2075, 2547, 2591, 2773 |
| Hpy99I | CGWCG | 2 cut(s) | 23, 65 |
| HpyCH4III | ACNGT | 8 cut(s) | 756, 1581, 1954, 1964, 2357, 2809, 2959, 2974 |
| HpyCH4IV | ACGT | 4 cut(s) | 18, 45, 2276, 2619 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 737, 979, 2019, 2154 |
| HpySE526I | ACGT | 4 cut(s) | 18, 45, 2276, 2619 |
| HspAI | GCGC | 3 cut(s) | 723, 2781, 2923 |
| Ksp22I | TGATCA | 1 cut(s) | 814 |
| LguI | GCTCTTC | 1 cut(s) | 3243 |
| LmnI | GCTCC | 8 cut(s) | 85, 292, 1459, 1720, 2137, 2164, 2710, 3229 |
| MaeI | CTAG | 6 cut(s) | 798, 1412, 1428, 1646, 2132, 3029 |
| MaeII | ACGT | 4 cut(s) | 18, 45, 2276, 2619 |
| MfeI | CAATTG | 3 cut(s) | 528, 708, 2091 |
| MflI | RGATCY | 5 cut(s) | 370, 1432, 1593, 2471, 2754 |
| MhlI | GDGCHC | 6 cut(s) | 90, 888, 1798, 2024, 2719, 3234 |
| MluI | ACGCGT | 1 cut(s) | 1274 |
| MlyI | GAGTC | 3 cut(s) | 867, 959, 3170 |
| MmeI | TCCRAC | 4 cut(s) | 1563, 1636, 2845, 3052 |
| Mph1103I | ATGCAT | 2 cut(s) | 733, 937 |
| MroXI | GAANNNNTTC | 2 cut(s) | 126, 2492 |
| MslI | CAYNNNNRTG | 2 cut(s) | 402, 676 |
| MspA1I | CMGCKG | 4 cut(s) | 351, 448, 1652, 2747 |
| MspI | CCGG | 2 cut(s) | 75, 2554 |
| MspR9I | CCNGG | 6 cut(s) | 224, 545, 1250, 1499, 2423, 2555 |
| MunI | CAATTG | 3 cut(s) | 528, 708, 2091 |
| Mva1269I | GAATGC | 3 cut(s) | 935, 2409, 2494 |
| MvaI | CCWGG | 5 cut(s) | 224, 545, 1250, 1499, 2423 |
| MvnI | CGCG | 1 cut(s) | 1276 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 737, 979, 2019, 2154 |
| NciI | CCSGG | 1 cut(s) | 2555 |
| NdeI | CATATG | 4 cut(s) | 577, 1012, 2016, 2371 |
| NheI | GCTAGC | 1 cut(s) | 1645 |
| NlaIV | GGNNCC | 4 cut(s) | 615, 1047, 2701, 2849 |
| NmuCI | GTSAC | 7 cut(s) | 22, 46, 621, 865, 1390, 2272, 2600 |
| NsiI | ATGCAT | 2 cut(s) | 733, 937 |
| NspI | RCATGY | 2 cut(s) | 1454, 2144 |
| NspV | TTCGAA | 1 cut(s) | 1147 |
| PaeI | GCATGC | 2 cut(s) | 1454, 2144 |
| PagI | TCATGA | 2 cut(s) | 850, 1360 |
| PciSI | GCTCTTC | 1 cut(s) | 3243 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 334, 1144, 2295 |
| PctI | GAATGC | 3 cut(s) | 935, 2409, 2494 |
| PdmI | GAANNNNTTC | 2 cut(s) | 126, 2492 |
| PfeI | GAWTC | 4 cut(s) | 1161, 2222, 2933, 2950 |
| PfoI | TCCNGGA | 1 cut(s) | 2553 |
| PleI | GAGTC | 3 cut(s) | 867, 959, 3169 |
| PpsI | GAGTC | 3 cut(s) | 867, 959, 3169 |
| Ppu21I | YACGTR | 1 cut(s) | 2620 |
| PpuMI | RGGWCCY | 2 cut(s) | 614, 2175 |
| PshAI | GACNNNNGTC | 1 cut(s) | 351 |
| PshBI | ATTAAT | 2 cut(s) | 386, 1473 |
| PsiI | TTATAA | 1 cut(s) | 845 |
| Psp124BI | GAGCTC | 3 cut(s) | 90, 888, 3234 |
| Psp5II | RGGWCCY | 2 cut(s) | 614, 2175 |
| Psp6I | CCWGG | 5 cut(s) | 222, 543, 1248, 1497, 2421 |
| PspFI | CCCAGC | 1 cut(s) | 821 |
| PspGI | CCWGG | 5 cut(s) | 222, 543, 1248, 1497, 2421 |
| PspN4I | GGNNCC | 4 cut(s) | 615, 1047, 2701, 2849 |
| PspPI | GGNCC | 7 cut(s) | 28, 77, 614, 1046, 2175, 2848, 2944 |
| PspPPI | RGGWCCY | 2 cut(s) | 614, 2175 |
| PstI | CTGCAG | 3 cut(s) | 722, 2445, 2580 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2936 |
| PsuI | RGATCY | 5 cut(s) | 370, 1432, 1593, 2471, 2754 |
| PvuII | CAGCTG | 2 cut(s) | 448, 1652 |
| RsaI | GTAC | 6 cut(s) | 990, 1578, 1765, 1900, 2566, 2622 |
| RsaNI | GTAC | 6 cut(s) | 989, 1577, 1764, 1899, 2565, 2621 |
| RseI | CAYNNNNRTG | 2 cut(s) | 402, 676 |
| SacI | GAGCTC | 3 cut(s) | 90, 888, 3234 |
| SapI | GCTCTTC | 1 cut(s) | 3243 |
| Sau96I | GGNCC | 7 cut(s) | 28, 77, 614, 1046, 2175, 2848, 2944 |
| SchI | GAGTC | 3 cut(s) | 867, 959, 3170 |
| ScrFI | CCNGG | 6 cut(s) | 224, 545, 1250, 1499, 2423, 2555 |
| SduI | GDGCHC | 6 cut(s) | 90, 888, 1798, 2024, 2719, 3234 |
| SfcI | CTRYAG | 6 cut(s) | 342, 718, 1960, 2441, 2576, 2748 |
| SfuI | TTCGAA | 1 cut(s) | 1147 |
| SinI | GGWCC | 2 cut(s) | 614, 2175 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 402, 676 |
| SmlI | CTYRAG | 7 cut(s) | 473, 875, 1076, 1338, 2855, 3009, 3049 |
| SmoI | CTYRAG | 7 cut(s) | 473, 875, 1076, 1338, 2855, 3009, 3049 |
| SnaBI | TACGTA | 1 cut(s) | 2620 |
| SphI | GCATGC | 2 cut(s) | 1454, 2144 |
| SsiI | CCGC | 6 cut(s) | 351, 562, 681, 1708, 2149, 2745 |
| SspMI | CTAG | 6 cut(s) | 798, 1412, 1428, 1646, 2132, 3029 |
| SstI | GAGCTC | 3 cut(s) | 90, 888, 3234 |
| StyD4I | CCNGG | 6 cut(s) | 222, 543, 1248, 1497, 2421, 2553 |
| StyI | CCWWGG | 6 cut(s) | 303, 617, 1090, 2400, 2776, 2878 |
| TaaI | ACNGT | 8 cut(s) | 756, 1581, 1954, 1964, 2357, 2809, 2959, 2974 |
| TaiI | ACGT | 4 cut(s) | 21, 48, 2279, 2622 |
| TatI | WGTACW | 3 cut(s) | 988, 1576, 1763 |
| TauI | GCSGC | 1 cut(s) | 2151 |
| TfiI | GAWTC | 4 cut(s) | 1161, 2222, 2933, 2950 |
| TscAI | CASTG | 6 cut(s) | 278, 1231, 1273, 1833, 2977, 3098 |
| TseFI | GTSAC | 7 cut(s) | 22, 46, 621, 865, 1390, 2272, 2600 |
| Tsp45I | GTSAC | 7 cut(s) | 22, 46, 621, 865, 1390, 2272, 2600 |
| TspDTI | ATGAA | 9 cut(s) | 386, 999, 1182, 1304, 2102, 2227, 2629, 2675, 3210 |
| TspGWI | ACGGA | 4 cut(s) | 130, 1886, 2108, 2231 |
| TspRI | CASTG | 6 cut(s) | 278, 1231, 1273, 1833, 2977, 3098 |
| VpaK11BI | GGWCC | 2 cut(s) | 614, 2175 |
| VspI | ATTAAT | 2 cut(s) | 386, 1473 |
| XapI | RAATTY | 6 cut(s) | 123, 1996, 2788, 2885, 3136, 3198 |
| XbaI | TCTAGA | 1 cut(s) | 3028 |
| XceI | RCATGY | 2 cut(s) | 1454, 2144 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3139 |
| XmnI | GAANNNNTTC | 2 cut(s) | 126, 2492 |
| XspI | CTAG | 6 cut(s) | 798, 1412, 1428, 1646, 2132, 3029 |
| Zsp2I | ATGCAT | 2 cut(s) | 733, 937 |