RchiOBHm_Chr4g0406881

Sel1-like repeats.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013755
Physical Location & Seq
Reverse (-)
28921726 .. 28924291
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37816

Sequence Viewer

Length: 297 bp
ATGAATATGTCCTGTCAGATCAACAAGCTTTCCATTATCTGGGGAAGGCAGTTGACCAGGTGCTCTTTACCTTCTGGGTGCTGTGTATCTGACCGGAGACTGTGTCTAGAAAGATGTTGCCTCCAAGTCTCCAACTTATGGTGTTTCCATAGGGCATCAGAGAAGGGACATGTGGGTGCAGCTATAGCAGATGGGTCTCTTTTTCTTCAAGGTGTTGAAGTCCTAGAATCTGTGATGAACTTGACAGAGACCAGGCAGAAATGGCAAGAGAGTGATTTTAGATCGCTGCAAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sel1

Protein Analysis

98

Amino Acids

11.11

Weight (kDa)

8.17

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 39, 138
AfiI CCNNNNNNNGG 2 cut(s) 39, 138
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 209, 218
AjnI CCWGG 2 cut(s) 56, 251
AluBI AGCT 2 cut(s) 28, 182
AluI AGCT 2 cut(s) 28, 182
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 4 cut(s) 91, 133, 201, 242
ApeKI GCWGC 2 cut(s) 179, 286
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 191, 273
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 58, 253
BcoDI GTCTC 4 cut(s) 91, 133, 201, 242
BfaI CTAG 2 cut(s) 107, 224
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 180, 287
BlsI GCNGC 2 cut(s) 181, 288
Bme1390I CCNGG 2 cut(s) 58, 253
BmrFI CCNGG 2 cut(s) 58, 253
BmsI GCATC 1 cut(s) 164
BsaI GGTCTC 2 cut(s) 201, 242
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 138
BseBI CCWGG 2 cut(s) 58, 253
BseLI CCNNNNNNNGG 2 cut(s) 39, 138
BseXI GCAGC 2 cut(s) 191, 273
BsgI GTGCAG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 39, 138
BsmAI GTCTC 4 cut(s) 91, 133, 201, 242
BsmFI GGGAC 1 cut(s) 180
Bso31I GGTCTC 2 cut(s) 201, 242
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 18, 281
BspTNI GGTCTC 2 cut(s) 201, 242
BssMI GATC 2 cut(s) 18, 281
Bst2UI CCWGG 2 cut(s) 58, 253
Bst4CI ACNGT 1 cut(s) 102
BstKTI GATC 2 cut(s) 21, 284
BstMAI GTCTC 4 cut(s) 91, 133, 201, 242
BstMBI GATC 2 cut(s) 18, 281
BstMWI GCNNNNNNNGC 2 cut(s) 185, 262
BstNI CCWGG 2 cut(s) 58, 253
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 56, 251
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 191, 273
CsiI ACCWGGT 1 cut(s) 56
CviAII CATG 1 cut(s) 170
CviJI RGCY 2 cut(s) 28, 182
CviKI_1 RGCY 2 cut(s) 28, 182
DpnI GATC 2 cut(s) 20, 283
DpnII GATC 2 cut(s) 18, 281
Eco31I GGTCTC 2 cut(s) 201, 242
EcoRII CCWGG 2 cut(s) 56, 251
FaeI CATG 1 cut(s) 173
FaiI YATR 5 cut(s) 8, 139, 150, 171, 185
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 180, 287
Fsp4HI GCNGC 2 cut(s) 180, 287
FspBI CTAG 2 cut(s) 107, 224
GluI GCNGC 2 cut(s) 180, 287
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 173
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 18, 91, 160
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 39, 81, 157
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 179, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 262
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 2 cut(s) 18, 281
LpnPI CCDG 8 cut(s) 25, 25, 43, 60, 70, 107, 238, 265
Lsp1109I GCAGC 2 cut(s) 191, 273
LweI GCATC 1 cut(s) 164
MabI ACCWGGT 1 cut(s) 56
MaeI CTAG 2 cut(s) 107, 224
MaeII ACGT 1 cut(s) 293
MalI GATC 2 cut(s) 20, 283
MboI GATC 2 cut(s) 18, 281
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 2 cut(s) 58, 253
MvaI CCWGG 2 cut(s) 58, 253
MwoI GCNNNNNNNGC 2 cut(s) 185, 262
NdeII GATC 2 cut(s) 18, 281
NlaIII CATG 1 cut(s) 173
NspI RCATGY 1 cut(s) 173
PciI ACATGT 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PfeI GAWTC 1 cut(s) 227
PflFI GACNNNGTC 1 cut(s) 102
PflMI CCANNNNNTGG 2 cut(s) 39, 138
PkrI GCNGC 2 cut(s) 181, 288
PscI ACATGT 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 56, 251
PspGI CCWGG 2 cut(s) 56, 251
PsyI GACNNNGTC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 2 cut(s) 180, 287
Sau3AI GATC 2 cut(s) 18, 281
ScrFI CCNGG 2 cut(s) 58, 253
SduI GDGCHC 1 cut(s) 65
SetI ASST 6 cut(s) 30, 62, 73, 184, 214, 296
SexAI ACCWGGT 1 cut(s) 56
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 174
SspMI CTAG 2 cut(s) 107, 224
StyD4I CCNGG 2 cut(s) 56, 251
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 296
TfiI GAWTC 1 cut(s) 227
TseI GCWGC 2 cut(s) 179, 286
TspDTI ATGAA 2 cut(s) 17, 251
Tth111I GACNNNGTC 1 cut(s) 102
Van91I CCANNNNNTGG 2 cut(s) 39, 138
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 107, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.