RchiOBHm_Chr2g0089501

Uncharacterized conserved protein (DUF2358)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
3690587 .. 3694157
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGCATTTAAGTGTACATGAAGACATTGTAGCCACTAATTTCAGAAATGAACATCAACCAATCAACTTGTGGCTAAGATGTTTCATAGCCAAAAAAGCAAGTTGCAATGCATGGGCACGCACCAAACCAACAGAGTCACACGCCCACCACAACCACCAAATGGCTAGCACACAACTTTCCGACCAAGTTTTCAGGCCAATCCCTGCCGTGTGCGTCAGTTTGCGGCAACTGAGCACCACCAAACCGAATAAACTACCATGCCACCCACGTCCCAAAGCCTTGAAACACAAACACTTGGGGATTCAAACAGCGCAGAACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTTGACCAAATCCCGCCAAAATCAACCGTCGACATGGAACGGTTAGTCGATTTTCTGTACCAGGATTTAGTGCACTTGTTTGATGATCAAGGAATTGATCGGACGGCGTATGATGAACGTGTGAAGTTCAGGGATCCAATCACCAAGCATGACTCTATAACTGGCTACTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCATTGGGTCAAACAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAATTCATCCCTCTGCCTTGGAAACCAGAATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCTGAAACCGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATAAGGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGAGATACTAAAAAGAACAGCAAATTATGAGGTAAGAAAGTACTCCCCTTTTATAGTGGTAGAAGGAAGTGTAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTCGGAAAGAACTCGAAAATGGAGAAGATGCCAATGACAACTCCAGTGTTCACAGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTAGACAAGGATTTAAGCAGTTTACCAGATCCTAATGCAGAAACAATTAGCTTGAAAAAAATGGAAGAAGGCATTGCTGCTGTTACCAAGTTCAGTGGGAAGCCTACCGAAGATGTTGTTCGTGAAAAGGAGAAATTGCTGCGTGCTAGTCTTATTAGAGATGGTCTCAAACCTAAGGCCGGTTGTATGCTTGCTCGTTACAATGACCCCGGCCGAACTTGGAGCTTTATACTGAGAAATGAAGTGCTGATATGGCTGGAGGAATTCACATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

50.97

Weight (kDa)

8.99

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 130 - 239 3.5e-28 Uncharacterized conserved protein (DUF2358)
SOUL PF04832 272 - 436 3.7e-37 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 2 cut(s) 378, 903
AciI CCGC 2 cut(s) 223, 362
AclWI GGATC 4 cut(s) 476, 489, 925, 1079
AcoI YGGCCR 1 cut(s) 1267
AcsI RAATTY 3 cut(s) 626, 1022, 1319
AfaI GTAC 5 cut(s) 15, 407, 670, 872, 947
AfiI CCNNNNNNNGG 3 cut(s) 160, 698, 1235
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 7 cut(s) 283, 305, 523, 538, 784, 931, 1111
AhdI GACNNNNNGTC 1 cut(s) 910
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 6 cut(s) 345, 790, 910, 923, 1107, 1281
AluI AGCT 6 cut(s) 345, 790, 910, 923, 1107, 1281
Alw21I GWGCWC 2 cut(s) 236, 423
Alw26I GTCTC 1 cut(s) 1226
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 4 cut(s) 476, 489, 925, 1079
AoxI GGCC 3 cut(s) 194, 1233, 1267
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 4 cut(s) 711, 787, 1133, 1195
ApoI RAATTY 3 cut(s) 626, 1022, 1319
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 2 cut(s) 700, 1266
AsuHPI GGTGA 1 cut(s) 481
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 1230
BaeGI GKGCMC 2 cut(s) 118, 423
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BamHI GGATCC 1 cut(s) 481
BbsI GAAGAC 4 cut(s) 27, 538, 545, 1043
Bbv12I GWGCWC 2 cut(s) 236, 423
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 4 cut(s) 723, 799, 1120, 1182
BccI CCATC 2 cut(s) 1046, 1211
BceAI ACGGC 2 cut(s) 191, 468
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 1 cut(s) 1045
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 2 cut(s) 700, 1266
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 3 cut(s) 165, 1058, 1203
BfmI CTRYAG 2 cut(s) 709, 759
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 5 cut(s) 224, 712, 788, 1134, 1196
BlsI GCNGC 5 cut(s) 225, 713, 789, 1135, 1197
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 3 cut(s) 410, 700, 1266
Bme18I GGWCC 1 cut(s) 587
BmeRI GACNNNNNGTC 1 cut(s) 910
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 410, 700, 1266
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 3 cut(s) 969, 1006, 1019
BmtI GCTAGC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 4 cut(s) 27, 538, 545, 1043
BplI GAGNNNNNCTC 2 cut(s) 1206, 1238
BpmI CTGGAG 3 cut(s) 792, 978, 1334
Bpu10I CCTNAGC 1 cut(s) 791
BpuMI CCSGG 2 cut(s) 700, 1266
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 2 cut(s) 641, 1264
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 698, 1235
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 5 cut(s) 514, 562, 670, 946, 995
Bse21I CCTNAGG 1 cut(s) 1230
Bse3DI GCAATG 3 cut(s) 112, 525, 1128
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 641, 1264
BseGI GGATG 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 160, 698, 1235
BseMI GCAATG 3 cut(s) 112, 525, 1128
BseMII CTCAG 3 cut(s) 221, 782, 1280
BseNI ACTGG 5 cut(s) 514, 562, 670, 946, 995
BseSI GKGCMC 2 cut(s) 118, 423
BseX3I CGGCCG 1 cut(s) 1267
BseXI GCAGC 4 cut(s) 723, 799, 1120, 1182
Bsh1285I CGRYCG 1 cut(s) 1270
BshFI GGCC 3 cut(s) 196, 1235, 1269
BsiEI CGRYCG 1 cut(s) 1270
BsiHKAI GWGCWC 2 cut(s) 236, 423
BsiSI CCGG 3 cut(s) 699, 1236, 1266
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 3 cut(s) 160, 698, 1235
BsmAI GTCTC 1 cut(s) 1226
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 3 cut(s) 196, 1235, 1269
Bso31I GGTCTC 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 118, 236, 423
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
BspACI CCGC 2 cut(s) 223, 362
BspANI GGCC 3 cut(s) 196, 1235, 1269
BspCNI CTCAG 3 cut(s) 222, 783, 1281
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 1 cut(s) 713
BspOI GCTAGC 1 cut(s) 168
BspPI GGATC 4 cut(s) 476, 489, 925, 1079
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 3 cut(s) 112, 525, 1128
BsrFI RCCGGY 1 cut(s) 1235
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 5 cut(s) 514, 562, 670, 946, 995
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 2 cut(s) 641, 1264
BssMI GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
BssT1I CCWWGG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 376, 390, 544, 582
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 118, 166, 1200, 1248
BstDEI CTNAG 7 cut(s) 74, 230, 341, 346, 791, 1230, 1289
BstF5I GGATG 1 cut(s) 630
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 6 cut(s) 436, 448, 484, 660, 920, 1087
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
BstMCI CGRYCG 1 cut(s) 1270
BstMWI GCNNNNNNNGC 3 cut(s) 95, 1016, 1309
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 408, 698, 1264
BstSFI CTRYAG 2 cut(s) 709, 759
BstSLI GKGCMC 2 cut(s) 118, 423
BstV1I GCAGC 4 cut(s) 723, 799, 1120, 1182
BstV2I GAAGAC 4 cut(s) 27, 538, 545, 1043
BstX2I RGATCY 2 cut(s) 481, 1084
BstYI RGATCY 2 cut(s) 481, 1084
BstZI CGGCCG 1 cut(s) 1267
Bsu36I CCTNAGG 1 cut(s) 1230
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 3 cut(s) 196, 1235, 1269
BtrI CACGTC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 663, 1002, 1156
Cac8I GCNNGC 4 cut(s) 118, 166, 1200, 1248
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 1 cut(s) 202
Csp6I GTAC 5 cut(s) 14, 406, 669, 871, 946
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 6 cut(s) 17, 111, 258, 382, 497, 716
CviQI GTAC 5 cut(s) 14, 406, 669, 871, 946
DdeI CTNAG 7 cut(s) 74, 230, 341, 346, 791, 1230, 1289
DpnI GATC 6 cut(s) 435, 447, 483, 659, 919, 1086
DpnII GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
DriI GACNNNNNGTC 1 cut(s) 910
EaeI YGGCCR 1 cut(s) 1267
EagI CGGCCG 1 cut(s) 1267
Eam1105I GACNNNNNGTC 1 cut(s) 910
EclXI CGGCCG 1 cut(s) 1267
Eco130I CCWWGG 1 cut(s) 641
Eco31I GGTCTC 1 cut(s) 1226
Eco47I GGWCC 1 cut(s) 587
Eco52I CGGCCG 1 cut(s) 1267
Eco81I CCTNAGG 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 1319
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 641
EcoT22I ATGCAT 2 cut(s) 6, 112
ErhI CCWWGG 1 cut(s) 641
FaeI CATG 6 cut(s) 20, 114, 261, 385, 500, 719
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 1035, 1067
FaqI GGGAC 1 cut(s) 255
FatI CATG 6 cut(s) 16, 110, 257, 381, 496, 715
FauI CCCGC 1 cut(s) 369
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 2 cut(s) 378, 903
Fnu4HI GCNGC 5 cut(s) 224, 712, 788, 1134, 1196
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 5 cut(s) 224, 712, 788, 1134, 1196
FspBI CTAG 3 cut(s) 165, 1058, 1203
GlaI GCGC 1 cut(s) 312
GluI GCNGC 5 cut(s) 224, 712, 788, 1134, 1196
GsuI CTGGAG 3 cut(s) 792, 978, 1334
HaeIII GGCC 3 cut(s) 196, 1235, 1269
HapII CCGG 3 cut(s) 699, 1236, 1266
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 313
Hin1II CATG 6 cut(s) 20, 114, 261, 385, 500, 719
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 2 cut(s) 352, 379
HindII GTYRAC 2 cut(s) 352, 379
HinfI GANTC 5 cut(s) 134, 301, 500, 684, 731
HpaII CCGG 3 cut(s) 699, 1236, 1266
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 9 cut(s) 14, 352, 379, 421, 612, 721, 904, 1002, 1079
Hpy188I TCNGA 5 cut(s) 44, 181, 450, 956, 1015
Hpy188III TCNNGA 5 cut(s) 535, 585, 809, 915, 1178
Hpy8I GTNNAC 9 cut(s) 14, 352, 379, 421, 612, 721, 904, 1002, 1079
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 4 cut(s) 541, 758, 887, 1118
HpyCH4III ACNGT 4 cut(s) 376, 390, 544, 582
HpyCH4IV ACGT 2 cut(s) 268, 466
HpyCH4V TGCA 7 cut(s) 4, 105, 110, 421, 568, 711, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 1016, 1309
HpyF3I CTNAG 7 cut(s) 74, 230, 341, 346, 791, 1230, 1289
HpySE526I ACGT 2 cut(s) 268, 466
Hsp92II CATG 6 cut(s) 20, 114, 261, 385, 500, 719
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
LmnI GCTCC 1 cut(s) 1278
Lsp1109I GCAGC 4 cut(s) 723, 799, 1120, 1182
LweI GCATC 3 cut(s) 969, 1006, 1019
MaeI CTAG 3 cut(s) 165, 1058, 1203
MaeII ACGT 2 cut(s) 268, 466
MaeIII GTNAC 4 cut(s) 135, 937, 1138, 1253
MalI GATC 6 cut(s) 435, 447, 483, 659, 919, 1086
MboI GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
MflI RGATCY 2 cut(s) 481, 1084
MhlI GDGCHC 3 cut(s) 118, 236, 423
MluCI AATT 9 cut(s) 37, 441, 626, 653, 853, 1022, 1101, 1190, 1319
MlyI GAGTC 2 cut(s) 143, 494
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 5 cut(s) 645, 786, 853, 1000, 1309
Mph1103I ATGCAT 2 cut(s) 6, 112
MseI TTAA 2 cut(s) 8, 1070
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 2 cut(s) 790, 923
MspI CCGG 3 cut(s) 699, 1236, 1266
MspR9I CCNGG 3 cut(s) 410, 700, 1266
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 95, 1016, 1309
NciI CCSGG 2 cut(s) 700, 1266
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 6 cut(s) 20, 114, 261, 385, 500, 719
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 135
NsiI ATGCAT 2 cut(s) 6, 112
PfeI GAWTC 3 cut(s) 301, 684, 731
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 5 cut(s) 225, 713, 789, 1135, 1197
PleI GAGTC 2 cut(s) 142, 494
PpsI GAGTC 2 cut(s) 142, 494
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 587
PstI CTGCAG 1 cut(s) 713
PsuI RGATCY 2 cut(s) 481, 1084
PvuII CAGCTG 2 cut(s) 790, 923
RsaI GTAC 5 cut(s) 15, 407, 670, 872, 947
RsaNI GTAC 5 cut(s) 14, 406, 669, 871, 946
RseI CAYNNNNRTG 1 cut(s) 9
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 8, 1070
SatI GCNGC 5 cut(s) 224, 712, 788, 1134, 1196
Sau3AI GATC 6 cut(s) 433, 445, 481, 657, 917, 1084
Sau96I GGNCC 1 cut(s) 587
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 2 cut(s) 143, 494
ScrFI CCNGG 3 cut(s) 410, 700, 1266
SduI GDGCHC 3 cut(s) 118, 236, 423
SfaNI GCATC 3 cut(s) 969, 1006, 1019
SfcI CTRYAG 2 cut(s) 709, 759
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 9 cut(s) 37, 441, 626, 653, 853, 1022, 1101, 1190, 1319
SsiI CCGC 2 cut(s) 223, 362
SspMI CTAG 3 cut(s) 165, 1058, 1203
StyD4I CCNGG 3 cut(s) 408, 698, 1264
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 4 cut(s) 376, 390, 544, 582
TaiI ACGT 2 cut(s) 271, 469
TaqI TCGA 3 cut(s) 378, 396, 965
TasI AATT 9 cut(s) 37, 441, 626, 653, 853, 1022, 1101, 1190, 1319
TatI WGTACW 2 cut(s) 13, 870
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 3 cut(s) 301, 684, 731
Tru1I TTAA 2 cut(s) 8, 1070
Tru9I TTAA 2 cut(s) 8, 1070
TscAI CASTG 3 cut(s) 670, 1002, 1156
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 4 cut(s) 711, 787, 1133, 1195
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 8 cut(s) 33, 63, 73, 477, 609, 619, 638, 1311
TspRI CASTG 3 cut(s) 670, 1002, 1156
Van91I CCANNNNNTGG 1 cut(s) 160
VneI GTGCAC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 3 cut(s) 626, 1022, 1319
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
XmiI GTMKAC 2 cut(s) 378, 903
XspI CTAG 3 cut(s) 165, 1058, 1203
ZrmI AGTACT 1 cut(s) 872
Zsp2I ATGCAT 2 cut(s) 6, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.