RchiOBHm_Chr2g0099271

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
11515132 .. 11518370
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1566 bp
ATGTATCCTCTCCTATTTCCCAAATCTCCTGCAAAAAAATGGTTGGGATTTGTAACAGCCATCTGGGTTCAGGCAGTCAGTGGCAACAATTACACATTCTCAAACTATTCTCATGCTCTGAAGACCCTCATGGCGCTTACACAGCTTCAACTCAACAATTTATCTGTCGCCAAAGATATCGGCAAGGCCTTTGGGCTGCTCTCCGGCATGGCTTCAGATCGTTTTGAGAGAATCAGCCCTCTTCCATATTGGCAGATGTGCATATTTTTGTGCATGGGGGGCAACAGCACAACATGGATGAACACTGCAGTGCTAGTAACTTGCATGAGAAATTTCACAAAAAACCGAGGTCCAGTTTCAGGCATCTGCAAGGGTTATGTAGGATTAAGCACAGCAATCTTCACAGACTTGTGCACTTCTCTATTTTCCTCAAGCCCCTCCAAATTTCTTCTCATGCTTGCTATAGTCCCTGCCATTATCTGCATAGCGGCGTGCATATTCCTCCAAGAAACCCCACCCGCTTCGAGTCCATCAGAGGAAAAACAAGAAGCAGAGGTCCTCAACATCTTCAATATCCTCGCCATTGTTGTAGCCGTCTATCTTTTGACCTTTGACATCACTGAACCACATGGTCATGTTCTATCTTTGGCATTTGCAATAGGACTAATTTTCTTGCTAGCTATGCCTTTGGGTGTGCCTTTGTACACTTTTCTTTGCACAACCAGATCTAATAGTTTTGATATAGAGCAGAAAACACTTGAGAATCCCCTCGTTGTTCAAAAAGCACTTTTGGAAAAGTCTGAGGAATTAGCAGGAGTTAAGGTGGCAGATTTTGAAGAATCAAAGCAAAGACCATCGATTGGGGACGATCATAACATAGTCCAAATGCTACAAACATTTGATTTTTGGATACTGTTTGGGTCCTTTCTCTGTGGCACAGGCACTGCAATGTGTGTCATGAACAACATGGCGCAGATGGGGCTGGCACTCGGCTACTCAAAGGTATCTATTTTCATCTCACTTCTTAGCATTTGGGGCTTTTTCGGGCGCATAGTCTCCGGCCTGATCTCTGAATACTACATTGGGAAACATGCCATGCCTAGGCCATTTTGGAATGCAATTGCTGAGATCCTAATGGCACTAGGATACCTAGCCATGGCTCTAGCCATGCCTGGATCTCTCTACATTGGCTCAATTTTTGTGGGTATGGGCTATGGGTTCCTTCTCACTATAACAGTCCCAGTGGCCTCAGAGCTATTTGGTCTCAAATACTATGGTCTTTTGTACAACATTCTGATCCTCAACCTTCCTTTGGGTTCTTTTCTCTTCTCCGGTTTACTTGCTGGTTATCTCTATGATGCTGAAGCTACAAAAACCAGTGAAGGGGGCAGCACTTGTGTTGGGTCACATTGTTACCGGCTTGTGAACTTGATCATGGCCCTTGCTTCTGTTTTGGGACTTGTATTGGATGTGTTGTTGGCCTTTAGAACAAAGAAAGTGTACACCAAGATTTACGACAGCAAGAAAAAGAAGATCATGGGATTTGCAGTATCAGCAAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.12

Weight (kDa)

8.58

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 75 4.8e-23 Nodulin-like
Nodulin-like PF06813 77 - 233 4.9e-47 Nodulin-like
NFD4_C PF23262 292 - 501 4.2e-27 NFD4, C-terminal domain
MFS_1 PF07690 306 - 501 2.1e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 860
AciI CCGC 2 cut(s) 488, 519
AclWI GGATC 3 cut(s) 1123, 1183, 1291
AcsI RAATTY 2 cut(s) 331, 443
AcuI CTGAAG 3 cut(s) 140, 198, 1383
AfaI GTAC 3 cut(s) 704, 1286, 1502
AfiI CCNNNNNNNGG 6 cut(s) 359, 860, 1101, 1156, 1312, 1383
AgsI TTSAA 4 cut(s) 149, 571, 779, 836
AjnI CCWGG 1 cut(s) 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 4 cut(s) 145, 680, 1255, 1367
AluI AGCT 4 cut(s) 145, 680, 1255, 1367
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 2 cut(s) 1060, 1268
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 3 cut(s) 1123, 1183, 1291
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 6 cut(s) 186, 1060, 1103, 1245, 1437, 1479
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 2 cut(s) 196, 1389
ApoI RAATTY 2 cut(s) 331, 443
AspA2I CCTAGG 1 cut(s) 1100
AspLEI GCGC 3 cut(s) 136, 973, 1050
AspS9I GGNCC 4 cut(s) 350, 556, 921, 1438
AsuNHI GCTAGC 1 cut(s) 676
AvaII GGWCC 3 cut(s) 350, 556, 921
AvrII CCTAGG 1 cut(s) 1100
BaeGI GKGCMC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 183, 1401
BccI CCATC 4 cut(s) 68, 538, 862, 970
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 1173
BciVI GTATCC 3 cut(s) 15, 903, 1139
BclI TGATCA 1 cut(s) 1431
BcoDI GTCTC 2 cut(s) 1060, 1268
BfaI CTAG 6 cut(s) 314, 677, 1101, 1142, 1151, 1163
BfmI CTRYAG 2 cut(s) 306, 462
BfoI RGCGCY 1 cut(s) 137
BfuI GTATCC 3 cut(s) 15, 903, 1139
BglII AGATCT 1 cut(s) 725
BisI GCNGC 3 cut(s) 197, 489, 1390
BlnI CCTAGG 1 cut(s) 1100
BlsI GCNGC 3 cut(s) 198, 490, 1391
Bme1390I CCNGG 1 cut(s) 1173
Bme18I GGWCC 3 cut(s) 350, 556, 921
BmgT120I GGNCC 4 cut(s) 350, 556, 921, 1438
BmiI GGNNCC 2 cut(s) 922, 1220
BmrFI CCNGG 1 cut(s) 1173
BmrI ACTGGG 1 cut(s) 1235
BmsI GCATC 2 cut(s) 372, 1348
BmtI GCTAGC 1 cut(s) 680
BmuI ACTGGG 1 cut(s) 1235
BpiI GAAGAC 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 415, 779
Bsa29I ATCGAT 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 1268
BsaJI CCNNGG 3 cut(s) 346, 1100, 1155
BsaWI WCCGGW 1 cut(s) 1331
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 6 cut(s) 359, 860, 1101, 1156, 1312, 1383
Bse118I RCCGGY 1 cut(s) 1416
Bse1I ACTGG 3 cut(s) 353, 1241, 1377
Bse3DI GCAATG 1 cut(s) 954
BseBI CCWGG 1 cut(s) 1173
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 3 cut(s) 346, 1100, 1155
BseGI GGATG 2 cut(s) 303, 1474
BseLI CCNNNNNNNGG 6 cut(s) 359, 860, 1101, 1156, 1312, 1383
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 792, 1116, 1263
BseNI ACTGG 3 cut(s) 353, 1241, 1377
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 183, 1401
BshFI GGCC 6 cut(s) 188, 1062, 1105, 1247, 1439, 1481
BshVI ATCGAT 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 4 cut(s) 204, 1059, 1332, 1417
BslFI GGGAC 4 cut(s) 452, 878, 1223, 1470
BslI CCNNNNNNNGG 6 cut(s) 359, 860, 1101, 1156, 1312, 1383
BsmAI GTCTC 2 cut(s) 1060, 1268
BsmFI GGGAC 4 cut(s) 452, 878, 1223, 1470
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 6 cut(s) 188, 1062, 1105, 1247, 1439, 1481
Bso31I GGTCTC 1 cut(s) 1268
Bsp1286I GDGCHC 1 cut(s) 416
Bsp1407I TGTACA 3 cut(s) 702, 1284, 1500
Bsp143I GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
Bsp19I CCATGG 1 cut(s) 1155
BspACI CCGC 2 cut(s) 488, 519
BspANI GGCC 6 cut(s) 188, 1062, 1105, 1247, 1439, 1481
BspCNI CTCAG 3 cut(s) 793, 1117, 1262
BspDI ATCGAT 1 cut(s) 857
BspHI TCATGA 1 cut(s) 957
BspLI GGNNCC 2 cut(s) 922, 1220
BspMAI CTGCAG 1 cut(s) 310
BspOI GCTAGC 1 cut(s) 680
BspPI GGATC 3 cut(s) 1123, 1183, 1291
BspTNI GGTCTC 1 cut(s) 1268
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 1 cut(s) 1416
BsrGI TGTACA 3 cut(s) 702, 1284, 1500
BsrI ACTGG 3 cut(s) 353, 1241, 1377
BssAI RCCGGY 1 cut(s) 1416
BssECI CCNNGG 3 cut(s) 346, 1100, 1155
BssMI GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
BssT1I CCWWGG 2 cut(s) 1100, 1155
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 2 cut(s) 915, 1237
Bst6I CTCTTC 2 cut(s) 246, 1331
BstAUI TGTACA 3 cut(s) 702, 1284, 1500
BstC8I GCNNGC 4 cut(s) 459, 493, 678, 984
BstDEI CTNAG 4 cut(s) 801, 1025, 1125, 1249
BstDSI CCRYGG 1 cut(s) 1155
BstF5I GGATG 2 cut(s) 303, 1474
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 3 cut(s) 136, 973, 1050
BstKTI GATC 9 cut(s) 220, 728, 871, 1068, 1131, 1178, 1299, 1434, 1536
BstMAI GTCTC 2 cut(s) 1060, 1268
BstMBI GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
BstMWI GCNNNNNNNGC 6 cut(s) 142, 279, 682, 979, 1035, 1553
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 1 cut(s) 1094
BstSCI CCNGG 1 cut(s) 1171
BstSFI CTRYAG 2 cut(s) 306, 462
BstSLI GKGCMC 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 183, 1401
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 725, 1128, 1175
BstYI RGATCY 3 cut(s) 725, 1128, 1175
Bsu15I ATCGAT 1 cut(s) 857
BsuI GTATCC 3 cut(s) 15, 903, 1139
BsuRI GGCC 6 cut(s) 188, 1062, 1105, 1247, 1439, 1481
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 1 cut(s) 1155
BtsCI GGATG 2 cut(s) 303, 1474
BtsI GCAGTG 3 cut(s) 303, 315, 942
BtsIMutI CAGTG 7 cut(s) 85, 303, 315, 618, 942, 1248, 1384
Cac8I GCNNGC 4 cut(s) 459, 493, 678, 984
CaiI CAGNNNCTG 1 cut(s) 944
CciI TCATGA 1 cut(s) 957
CfoI GCGC 3 cut(s) 136, 973, 1050
Cfr10I RCCGGY 1 cut(s) 1416
Cfr13I GGNCC 4 cut(s) 350, 556, 921, 1438
ClaI ATCGAT 1 cut(s) 857
Csp6I GTAC 3 cut(s) 703, 1285, 1501
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviQI GTAC 3 cut(s) 703, 1285, 1501
DdeI CTNAG 4 cut(s) 801, 1025, 1125, 1249
DpnI GATC 9 cut(s) 219, 727, 870, 1067, 1130, 1177, 1298, 1433, 1535
DpnII GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
Eam1104I CTCTTC 2 cut(s) 246, 1331
EarI CTCTTC 2 cut(s) 246, 1331
Eco130I CCWWGG 2 cut(s) 1100, 1155
Eco147I AGGCCT 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 1268
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 3 cut(s) 350, 556, 921
Eco57I CTGAAG 3 cut(s) 140, 198, 1383
EcoO109I RGGNCCY 2 cut(s) 556, 921
EcoRII CCWGG 1 cut(s) 1171
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 1100, 1155
ErhI CCWWGG 2 cut(s) 1100, 1155
FaqI GGGAC 4 cut(s) 452, 878, 1223, 1470
FauI CCCGC 1 cut(s) 526
FbaI TGATCA 1 cut(s) 1431
Fnu4HI GCNGC 3 cut(s) 197, 489, 1390
FokI GGATG 2 cut(s) 310, 1481
Fsp4HI GCNGC 3 cut(s) 197, 489, 1390
FspBI CTAG 6 cut(s) 314, 677, 1101, 1142, 1151, 1163
GlaI GCGC 3 cut(s) 135, 972, 1049
GluI GCNGC 3 cut(s) 197, 489, 1390
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 6 cut(s) 188, 1062, 1105, 1247, 1439, 1481
HapII CCGG 4 cut(s) 204, 1059, 1332, 1417
HhaI GCGC 3 cut(s) 136, 973, 1050
Hin6I GCGC 3 cut(s) 134, 971, 1048
HinP1I GCGC 3 cut(s) 134, 971, 1048
HinfI GANTC 4 cut(s) 231, 526, 763, 839
HpaII CCGG 4 cut(s) 204, 1059, 1332, 1417
Hpy166II GTNNAC 6 cut(s) 414, 705, 1337, 1426, 1501, 1503
Hpy188I TCNGA 7 cut(s) 120, 217, 535, 802, 1072, 1252, 1296
Hpy188III TCNNGA 1 cut(s) 958
Hpy8I GTNNAC 6 cut(s) 414, 705, 1337, 1426, 1501, 1503
HpyAV CCTTC 3 cut(s) 1232, 1316, 1376
HpyCH4III ACNGT 2 cut(s) 915, 1237
HpyF10VI GCNNNNNNNGC 6 cut(s) 142, 279, 682, 979, 1035, 1553
HpyF3I CTNAG 4 cut(s) 801, 1025, 1125, 1249
HspAI GCGC 3 cut(s) 134, 971, 1048
Ksp22I TGATCA 1 cut(s) 1431
Kzo9I GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
Lsp1109I GCAGC 2 cut(s) 183, 1401
LweI GCATC 2 cut(s) 372, 1348
MaeI CTAG 6 cut(s) 314, 677, 1101, 1142, 1151, 1163
MaeIII GTNAC 4 cut(s) 52, 316, 1404, 1412
MalI GATC 9 cut(s) 219, 727, 870, 1067, 1130, 1177, 1298, 1433, 1535
MboI GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
MboII GAAGA 8 cut(s) 133, 233, 391, 440, 559, 848, 1318, 1543
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 3 cut(s) 725, 1128, 1175
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 8 cut(s) 88, 157, 331, 443, 666, 806, 1119, 1194
MlyI GAGTC 1 cut(s) 535
MseI TTAA 2 cut(s) 386, 819
MslI CAYNNNNRTG 3 cut(s) 308, 633, 947
MspI CCGG 4 cut(s) 204, 1059, 1332, 1417
MspR9I CCNGG 1 cut(s) 1173
MunI CAATTG 1 cut(s) 1119
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 1173
MwoI GCNNNNNNNGC 6 cut(s) 142, 279, 682, 979, 1035, 1553
NcoI CCATGG 1 cut(s) 1155
NdeII GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
NheI GCTAGC 1 cut(s) 676
NlaIV GGNNCC 2 cut(s) 922, 1220
NmeAIII GCCGAG 1 cut(s) 969
NmuCI GTSAC 1 cut(s) 1404
NspI RCATGY 1 cut(s) 1094
OliI CACNNNNGTG 1 cut(s) 308
PagI TCATGA 1 cut(s) 957
PceI AGGCCT 1 cut(s) 188
PctI GAATGC 1 cut(s) 1120
PfeI GAWTC 3 cut(s) 231, 763, 839
PflMI CCANNNNNTGG 1 cut(s) 860
PkrI GCNGC 3 cut(s) 198, 490, 1391
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 2 cut(s) 556, 921
Psp5II RGGWCCY 2 cut(s) 556, 921
Psp6I CCWGG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 2 cut(s) 922, 1220
PspPI GGNCC 4 cut(s) 350, 556, 921, 1438
PspPPI RGGWCCY 2 cut(s) 556, 921
PstI CTGCAG 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 3 cut(s) 725, 1128, 1175
RsaI GTAC 3 cut(s) 704, 1286, 1502
RsaNI GTAC 3 cut(s) 703, 1285, 1501
RseI CAYNNNNRTG 3 cut(s) 308, 633, 947
SaqAI TTAA 2 cut(s) 386, 819
SatI GCNGC 3 cut(s) 197, 489, 1390
Sau3AI GATC 9 cut(s) 217, 725, 868, 1065, 1128, 1175, 1296, 1431, 1533
Sau96I GGNCC 4 cut(s) 350, 556, 921, 1438
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 1173
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 2 cut(s) 372, 1348
SfcI CTRYAG 2 cut(s) 306, 462
SinI GGWCC 3 cut(s) 350, 556, 921
SmiMI CAYNNNNRTG 3 cut(s) 308, 633, 947
SmlI CTYRAG 2 cut(s) 430, 758
SmoI CTYRAG 2 cut(s) 430, 758
Sse9I AATT 8 cut(s) 88, 157, 331, 443, 666, 806, 1119, 1194
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 2 cut(s) 488, 519
SspMI CTAG 6 cut(s) 314, 677, 1101, 1142, 1151, 1163
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 1171
StyI CCWWGG 2 cut(s) 1100, 1155
TaaI ACNGT 2 cut(s) 915, 1237
TaqI TCGA 2 cut(s) 524, 857
TasI AATT 8 cut(s) 88, 157, 331, 443, 666, 806, 1119, 1194
TatI WGTACW 3 cut(s) 702, 1284, 1500
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 3 cut(s) 231, 763, 839
Tru1I TTAA 2 cut(s) 386, 819
Tru9I TTAA 2 cut(s) 386, 819
TscAI CASTG 7 cut(s) 85, 310, 315, 625, 949, 1248, 1384
TseFI GTSAC 1 cut(s) 1404
TseI GCWGC 2 cut(s) 196, 1389
Tsp45I GTSAC 1 cut(s) 1404
TspDTI ATGAA 3 cut(s) 314, 974, 1003
TspRI CASTG 7 cut(s) 85, 310, 315, 625, 949, 1248, 1384
Van91I CCANNNNNTGG 1 cut(s) 860
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 350, 556, 921
XapI RAATTY 2 cut(s) 331, 443
XceI RCATGY 1 cut(s) 1094
XmaJI CCTAGG 1 cut(s) 1100
XspI CTAG 6 cut(s) 314, 677, 1101, 1142, 1151, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.