RchiOBHm_Chr2g0100341

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
12319565 .. 12323993
4429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
ATGTCGTCGTCGTCGGCGTCTCCGCAGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTTGCAGCTATGCATCCCCTCGACGTCGTCCGCACCAGGTTTCAAGTCAACGACGGCCGAATCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATTGGAGGGACTGAGAGGACTCTATGCAGGCTTCTCTCCTGCTGTGATTGGCTCCACTGGTTCCTGGGGTTTATATTTCTTCTTCTATGGAAGAGCCAAACAGAGGTATTCTAAAAACGGGGATGAGAAGCTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCAGAAGCTGGTGCTCTGGTTTCTTTGTGCACAAATCCTATTTGGCTTGTAAAAACAAGACTGCAGCTTCAGACTCCTCTCCATCAAACACGCCCATATTCTGGTTTTTATGATGCCTTGAGAACCATAATGAGAGAGGAAGGATTTGCTGCACTGTATAAGGGTCTTGGTCCTAGTCTTTTTCTGGTCTCCCATGGTGCTATTCAATTTACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAGTCTAAACAAGGCACAAGTAATTCTGGAAGTTCGGATACTGTATTGAATTCACTTGACTATGCAGCCTTAGGGGCATCATCGAAAGTCGCTGCCATTCTTCTATCATATCCATTCCAGGTTATACGATCTCGATTGCAGCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTTAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATGTACTGAAATTTCTAAAATTAGCTAAAAGGAACGAGTAG

Protein Analysis

313

Amino Acids

34.47

Weight (kDa)

9.87

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 102 1.2e-20 Mitochondrial carrier protein
Mito_carr PF00153 107 - 198 2.5e-22 Mitochondrial carrier protein
Mito_carr PF00153 217 - 307 2e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 452
AciI CCGC 3 cut(s) 23, 48, 106
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 649, 762, 911
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 3 cut(s) 17, 54, 99
AfaI GTAC 1 cut(s) 906
AfiI CCNNNNNNNGG 2 cut(s) 294, 452
AgsI TTSAA 5 cut(s) 119, 557, 601, 649, 879
AhdI GACNNNNNGTC 1 cut(s) 601
AjnI CCWGG 4 cut(s) 110, 254, 328, 717
AluBI AGCT 6 cut(s) 83, 322, 359, 418, 783, 926
AluI AGCT 6 cut(s) 83, 322, 359, 418, 783, 926
Alw21I GWGCWC 2 cut(s) 367, 383
Alw26I GTCTC 2 cut(s) 24, 544
Alw44I GTGCAC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 1 cut(s) 130
ApaLI GTGCAC 1 cut(s) 379
ApeKI GCWGC 8 cut(s) 80, 350, 415, 500, 665, 692, 739, 872
ApoI RAATTY 3 cut(s) 649, 762, 911
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 521
AxyI CCTNAGG 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 622, 654
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 367, 383
BbvI GCAGC 8 cut(s) 92, 362, 427, 487, 677, 679, 751, 859
BccI CCATC 1 cut(s) 441
BceAI ACGGC 3 cut(s) 41, 145, 180
BciT130I CCWGG 4 cut(s) 112, 256, 330, 719
BciVI GTATCC 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 24, 544
BfaI CTAG 2 cut(s) 525, 750
BfmI CTRYAG 3 cut(s) 348, 413, 832
BfoI RGCGCY 1 cut(s) 57
BfuI GTATCC 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 674
BisI GCNGC 8 cut(s) 81, 351, 416, 501, 666, 693, 740, 873
BlsI GCNGC 8 cut(s) 82, 352, 417, 502, 667, 694, 741, 874
Bme1390I CCNGG 4 cut(s) 112, 256, 330, 719
Bme18I GGWCC 1 cut(s) 521
BmeRI GACNNNNNGTC 1 cut(s) 601
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 3 cut(s) 55, 244, 253
BmrFI CCNGG 4 cut(s) 112, 256, 330, 719
BmsI GCATC 3 cut(s) 97, 454, 686
BpiI GAAGAC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 490
BsaHI GRCGYC 3 cut(s) 17, 54, 99
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 2 cut(s) 255, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 452
Bse118I RCCGGY 2 cut(s) 50, 62
Bse1I ACTGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 4 cut(s) 112, 256, 330, 719
BseDI CCNNGG 2 cut(s) 255, 544
BseGI GGATG 2 cut(s) 88, 319
BseLI CCNNNNNNNGG 2 cut(s) 294, 452
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 194, 314, 747
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 383
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 8 cut(s) 92, 362, 427, 487, 677, 679, 751, 859
BsgI GTGCAG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 367, 383
BsiSI CCGG 2 cut(s) 51, 63
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 294, 452
BsmAI GTCTC 2 cut(s) 24, 544
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 367, 383
Bsp143I GATC 1 cut(s) 728
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 3 cut(s) 23, 48, 106
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 3 cut(s) 195, 315, 748
BspLI GGNNCC 3 cut(s) 55, 244, 253
BspMAI CTGCAG 2 cut(s) 352, 417
BspQI GCTCTTC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 2 cut(s) 50, 62
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 2 cut(s) 50, 62
BssECI CCNNGG 2 cut(s) 255, 544
BssMI GATC 1 cut(s) 728
BssNI GRCGYC 3 cut(s) 17, 54, 99
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 4 cut(s) 112, 256, 330, 719
Bst4CI ACNGT 4 cut(s) 76, 507, 643, 810
Bst6I CTCTTC 1 cut(s) 277
BstACI GRCGYC 3 cut(s) 17, 54, 99
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 52, 64, 220, 785
BstDEI CTNAG 4 cut(s) 203, 323, 670, 756
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 88, 319
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 731
BstMAI GTCTC 2 cut(s) 24, 544
BstMBI GATC 1 cut(s) 728
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 350, 356, 674
BstNI CCWGG 4 cut(s) 112, 256, 330, 719
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 4 cut(s) 110, 254, 328, 717
BstSFI CTRYAG 3 cut(s) 348, 413, 832
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 8 cut(s) 92, 362, 427, 487, 677, 679, 751, 859
BstV2I GAAGAC 1 cut(s) 326
BstZI CGGCCG 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 670
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 88, 319
BtsI GCAGTG 2 cut(s) 32, 38
BtsIMutI CAGTG 4 cut(s) 32, 38, 246, 503
Cac8I GCNNGC 4 cut(s) 52, 64, 220, 785
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 50, 62
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 110
Csp6I GTAC 1 cut(s) 905
CviAII CATG 2 cut(s) 545, 788
CviQI GTAC 1 cut(s) 905
DdeI CTNAG 4 cut(s) 203, 323, 670, 756
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 730
DpnII GATC 1 cut(s) 728
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 277
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 521
Eco52I CGGCCG 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 670
EcoRI GAATTC 2 cut(s) 649, 762
EcoRII CCWGG 4 cut(s) 110, 254, 328, 717
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 2 cut(s) 548, 791
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 544, 787
FauNDI CATATG 1 cut(s) 568
Fnu4HI GCNGC 8 cut(s) 81, 351, 416, 501, 666, 693, 740, 873
FokI GGATG 2 cut(s) 75, 326
Fsp4HI GCNGC 8 cut(s) 81, 351, 416, 501, 666, 693, 740, 873
FspBI CTAG 2 cut(s) 525, 750
GlaI GCGC 1 cut(s) 55
GluI GCNGC 8 cut(s) 81, 351, 416, 501, 666, 693, 740, 873
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 132
HapII CCGG 2 cut(s) 51, 63
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 3 cut(s) 17, 54, 99
Hin1II CATG 2 cut(s) 548, 791
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 124, 595
HindII GTYRAC 2 cut(s) 124, 595
HinfI GANTC 4 cut(s) 135, 210, 325, 424
HpaII CCGG 2 cut(s) 51, 63
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 124, 381, 595
Hpy188I TCNGA 4 cut(s) 150, 423, 637, 757
Hpy188III TCNNGA 2 cut(s) 627, 732
Hpy8I GTNNAC 3 cut(s) 124, 381, 595
Hpy99I CGWCG 7 cut(s) 10, 13, 16, 62, 101, 104, 131
HpyAV CCTTC 2 cut(s) 485, 863
HpyCH4III ACNGT 4 cut(s) 76, 507, 643, 810
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 350, 356, 674
HpyF3I CTNAG 4 cut(s) 203, 323, 670, 756
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 3 cut(s) 17, 54, 99
Hsp92II CATG 2 cut(s) 548, 791
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
KroI GCCGGC 2 cut(s) 50, 62
KroNI GCCGGC 2 cut(s) 52, 64
Kzo9I GATC 1 cut(s) 728
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 8 cut(s) 92, 362, 427, 487, 677, 679, 751, 859
LweI GCATC 3 cut(s) 97, 454, 686
MabI ACCWGGT 1 cut(s) 110
MaeI CTAG 2 cut(s) 525, 750
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 730
MboI GATC 1 cut(s) 728
MboII GAAGA 8 cut(s) 137, 169, 262, 265, 294, 326, 584, 692
MhlI GDGCHC 2 cut(s) 367, 383
MluCI AATT 7 cut(s) 557, 622, 649, 762, 840, 911, 920
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 204, 334, 418
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 9 cut(s) 104, 190, 200, 288, 438, 481, 751, 808, 818
Mph1103I ATGCAT 1 cut(s) 90
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 2 cut(s) 50, 62
MseI TTAA 1 cut(s) 858
MspI CCGG 2 cut(s) 51, 63
MspR9I CCNGG 4 cut(s) 112, 256, 330, 719
MvaI CCWGG 4 cut(s) 112, 256, 330, 719
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 350, 356, 674
NaeI GCCGGC 2 cut(s) 52, 64
NarI GGCGCC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 544
NdeI CATATG 1 cut(s) 568
NdeII GATC 1 cut(s) 728
NgoMIV GCCGGC 2 cut(s) 50, 62
NlaIII CATG 2 cut(s) 548, 791
NlaIV GGNNCC 3 cut(s) 55, 244, 253
NsiI ATGCAT 1 cut(s) 90
NspI RCATGY 1 cut(s) 791
PciSI GCTCTTC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdiI GCCGGC 2 cut(s) 52, 64
PfeI GAWTC 1 cut(s) 135
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 452
PkrI GCNGC 8 cut(s) 82, 352, 417, 502, 667, 694, 741, 874
PleI GAGTC 3 cut(s) 204, 333, 418
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 204, 333, 418
Psp6I CCWGG 4 cut(s) 110, 254, 328, 717
PspGI CCWGG 4 cut(s) 110, 254, 328, 717
PspN4I GGNNCC 3 cut(s) 55, 244, 253
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 2 cut(s) 352, 417
PstNI CAGNNNCTG 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 906
RsaNI GTAC 1 cut(s) 905
SapI GCTCTTC 1 cut(s) 277
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 8 cut(s) 81, 351, 416, 501, 666, 693, 740, 873
Sau3AI GATC 1 cut(s) 728
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 3 cut(s) 204, 334, 418
ScrFI CCNGG 4 cut(s) 112, 256, 330, 719
SduI GDGCHC 2 cut(s) 367, 383
SexAI ACCWGGT 1 cut(s) 110
SfaNI GCATC 3 cut(s) 97, 454, 686
SfcI CTRYAG 3 cut(s) 348, 413, 832
SfoI GGCGCC 1 cut(s) 55
SgrAI CRCCGGYG 1 cut(s) 50
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 7 cut(s) 557, 622, 649, 762, 840, 911, 920
SsiI CCGC 3 cut(s) 23, 48, 106
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 2 cut(s) 525, 750
StyD4I CCNGG 4 cut(s) 110, 254, 328, 717
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 4 cut(s) 76, 507, 643, 810
TaiI ACGT 1 cut(s) 102
TaqI TCGA 5 cut(s) 96, 190, 683, 733, 823
TasI AATT 7 cut(s) 557, 622, 649, 762, 840, 911, 920
TatI WGTACW 1 cut(s) 904
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 4 cut(s) 32, 38, 253, 510
TseI GCWGC 8 cut(s) 80, 350, 415, 500, 665, 692, 739, 872
TspDTI ATGAA 3 cut(s) 326, 585, 912
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 4 cut(s) 32, 38, 253, 510
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 452
VneI GTGCAC 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 3 cut(s) 649, 762, 911
XceI RCATGY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XspI CTAG 2 cut(s) 525, 750
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.