RchiOBHm_Chr2g0101601

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011777
Physical Location & Seq
Forward (+)
13157495 .. 13159882
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGTAAATTTCGTGAGGGATATAAGAGATCCGGAGCATCCGTACTCGTTAGAGCAGCTCAGCGTGCTTTCCGAGGAGTCCATCACCGTCGACGACAAGCTCGGCCGGATTCTGATTACGTTCACGCCAACCATTCAGCATTGCAGTATGGCAACAGTGATAGGACTATGCCTGAGAGTTAAACTCAAGCAATGTTTCCCTCCTCATTACAAGGTTGACATTAAGGTATCTCCAGGATCTCATGCAGATGAAGAATCAGTTAATAAGCAGTTGAATGATAAAGAAAGAGTTGCTGCTGCCCTGGAGAATCCTAACCTTCGCCAACTTGTGGATGAGTGCCTCTATTCCAGTGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

5.29

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011777)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50845
fragaria_vesca FvH4_1g13320 FvH4_1g13320 FvH4_1g13320
malus_domestica MD02G1148000.v1.1 MD11G1309300.v1.1
prunus_persica Prupe.7G154400_v2.0.a1 Prupe.7G154400_v2.0.a1
pyrus_communis pycom02g11670
rosa_chinensis RchiOBHm_Chr2g0101601
rosa_laevigata RLG00000017093
rosa_multiflora Rmu_sc0006153.1_g000005
rosa_roxburghii Rroxscaffold_2G00141160
rosa_rugosa Rorug02G0101000
rosa_samantha Rh2AG148300 Rh2BG153700 Rh2CG154100 Rh2DG154100
rosa_wichuraiana Rw2G011570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 31
AclWI GGATC 2 cut(s) 23, 244
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 232, 300
AluBI AGCT 2 cut(s) 58, 100
AluI AGCT 2 cut(s) 58, 100
AlwI GGATC 2 cut(s) 23, 244
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 55, 293, 296
ApoI RAATTY 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 3 cut(s) 67, 280, 283
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 234, 302
BisI GCNGC 3 cut(s) 56, 294, 297
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 57, 295, 298
Bme1390I CCNGG 2 cut(s) 234, 302
BmrFI CCNGG 2 cut(s) 234, 302
BmsI GCATC 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 2 cut(s) 216, 323
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 72, 300
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 139, 197
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 234, 302
BseDI CCNNGG 2 cut(s) 72, 300
BseGI GGATG 2 cut(s) 37, 337
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 139, 197
BseMII CTCAG 2 cut(s) 73, 164
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 89, 192
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 67, 280, 283
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 32, 106
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 2 cut(s) 28, 236
Bsp1720I GCTNAGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 72, 165
BspEI TCCGGA 1 cut(s) 31
BspPI GGATC 2 cut(s) 23, 244
BsrDI GCAATG 2 cut(s) 139, 197
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 72, 300
BssMI GATC 2 cut(s) 28, 236
Bst2UI CCWGG 2 cut(s) 234, 302
Bst4CI ACNGT 3 cut(s) 88, 157, 357
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 59, 173
BstF5I GGATG 2 cut(s) 37, 337
BstKTI GATC 2 cut(s) 31, 239
BstMBI GATC 2 cut(s) 28, 236
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 2 cut(s) 234, 302
BstSCI CCNGG 2 cut(s) 232, 300
BstV1I GCAGC 3 cut(s) 67, 280, 283
BstX2I RGATCY 2 cut(s) 28, 236
BstYI RGATCY 2 cut(s) 28, 236
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 37, 337
BtsIMutI CAGTG 2 cut(s) 162, 355
Cac8I GCNNGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 242
CviJI RGCY 3 cut(s) 58, 100, 105
CviKI_1 RGCY 3 cut(s) 58, 100, 105
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 59, 173
DpnI GATC 2 cut(s) 30, 238
DpnII GATC 2 cut(s) 28, 236
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 232, 300
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 23, 149, 169, 243
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 56, 294, 297
FokI GGATG 2 cut(s) 24, 344
Fsp4HI GCNGC 3 cut(s) 56, 294, 297
GluI GCNGC 3 cut(s) 56, 294, 297
GsuI CTGGAG 2 cut(s) 216, 323
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 32, 106
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 2 cut(s) 91, 217
HindII GTYRAC 2 cut(s) 91, 217
HinfI GANTC 4 cut(s) 77, 109, 254, 307
HpaII CCGG 2 cut(s) 32, 106
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 4 cut(s) 91, 123, 217, 353
Hpy188I TCNGA 2 cut(s) 73, 114
Hpy188III TCNNGA 2 cut(s) 13, 32
Hpy8I GTNNAC 4 cut(s) 91, 123, 217, 353
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 3 cut(s) 88, 157, 357
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 144, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 59, 173
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 245
Kpn2I TCCGGA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 28, 236
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 45, 119, 185, 219, 246, 287, 314
Lsp1109I GCAGC 3 cut(s) 67, 280, 283
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 30, 238
MboI GATC 2 cut(s) 28, 236
MboII GAAGA 1 cut(s) 263
MflI RGATCY 2 cut(s) 28, 236
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 9, 67, 210, 213, 350
MroI TCCGGA 1 cut(s) 31
MseI TTAA 3 cut(s) 180, 222, 261
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 2 cut(s) 32, 106
MspR9I CCNGG 2 cut(s) 234, 302
MvaI CCWGG 2 cut(s) 234, 302
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 2 cut(s) 28, 236
NlaIII CATG 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 81
PfeI GAWTC 3 cut(s) 109, 254, 307
PflMI CCANNNNNTGG 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 3 cut(s) 57, 295, 298
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 232, 300
PspGI CCWGG 2 cut(s) 232, 300
PsuI RGATCY 2 cut(s) 28, 236
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 180, 222, 261
SatI GCNGC 3 cut(s) 56, 294, 297
Sau3AI GATC 2 cut(s) 28, 236
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 234, 302
SetI ASST 6 cut(s) 60, 102, 122, 216, 228, 318
SfaNI GCATC 1 cut(s) 46
SgrDI CGTCGACG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 2 cut(s) 232, 300
TaaI ACNGT 3 cut(s) 88, 157, 357
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 7
TfiI GAWTC 3 cut(s) 109, 254, 307
Tru1I TTAA 3 cut(s) 180, 222, 261
Tru9I TTAA 3 cut(s) 180, 222, 261
TscAI CASTG 2 cut(s) 162, 355
TseI GCWGC 3 cut(s) 55, 293, 296
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 162, 355
Van91I CCANNNNNTGG 1 cut(s) 328
XapI RAATTY 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.