Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Forward (+)

17629733 .. 17631014

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGGGCATTTTTGCTGGGCCTCCAGGTCTTTCAGATTCGACCGTTTTGAGCTTCTCGGAGGTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAATCAGTTTTGGGTCTTGAATCTGACCAATCCGGTGATGATCGGGATGGGTCACAGCTATGATCAGAGCTCCATTACGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGGAAACAGGGGAGAAAACGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATCGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCACATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTTGAAGCATTCAAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTCTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCACATTGGGGAAGAAAACCCCCAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

285

Amino Acids

31.19

Weight (kDa)

9.13

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	61 - 118	1.1e-09	U-box domain
Arm	PF00514	179 - 215	4.4e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccB1I	GGYRCC	2 cut(s)	304, 565
AccBSI	CCGCTC	1 cut(s)	151
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	151, 425
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	3 cut(s)	92, 109, 341
AfiI	CCNNNNNNNGG	3 cut(s)	129, 275, 381
AgsI	TTSAA	8 cut(s)	178, 322, 580, 637, 646, 654, 677, 762
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	9 cut(s)	54, 216, 228, 251, 420, 437, 557, 583, 665
AluI	AGCT	9 cut(s)	54, 216, 228, 251, 420, 437, 557, 583, 665
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	2 cut(s)	20, 844
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	20, 64
AsuC2I	CCSGG	3 cut(s)	112, 113, 124
AsuHPI	GGTGA	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	304, 565
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbsI	GAAGAC	2 cut(s)	108, 611
Bbv12I	GWGCWC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	3 cut(s)	112, 113, 124
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	2 cut(s)	770, 848
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmcAI	AGTACT	2 cut(s)	92, 341
Bme1390I	CCNGG	4 cut(s)	27, 112, 113, 124
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	20, 64
BmiI	GGNNCC	2 cut(s)	306, 567
BmrFI	CCNGG	4 cut(s)	27, 112, 113, 124
BmsI	GCATC	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	108, 611
BpmI	CTGGAG	2 cut(s)	9, 579
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	3 cut(s)	112, 113, 124
BsaBI	GATNNNNATC	1 cut(s)	787
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	3 cut(s)	190, 268, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 275, 381
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	787
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	138, 210, 709
BseJI	GATNNNNATC	1 cut(s)	787
BseLI	CCNNNNNNNGG	3 cut(s)	129, 275, 381
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	415
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	22, 846
BshNI	GGYRCC	2 cut(s)	304, 565
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	5 cut(s)	112, 124, 191, 269, 375
BslFI	GGGAC	2 cut(s)	128, 790
BslI	CCNNNNNNNGG	3 cut(s)	129, 275, 381
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	2 cut(s)	128, 790
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	22, 846
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	198, 220, 482
BspACI	CCGC	2 cut(s)	151, 425
BspANI	GGCC	2 cut(s)	22, 846
BspCNI	CTCAG	1 cut(s)	421
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	306, 567
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	2 cut(s)	304, 565
BspTNI	GGTCTC	1 cut(s)	725
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	198, 220, 482
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	46, 107
Bst6I	CTCTTC	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	602
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	3 cut(s)	138, 210, 709
BstKTI	GATC	3 cut(s)	201, 223, 485
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	3 cut(s)	198, 220, 482
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 434
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	25, 110, 111, 122
BstSFI	CTRYAG	1 cut(s)	594
BstV2I	GAAGAC	2 cut(s)	108, 611
BsuRI	GGCC	2 cut(s)	22, 846
BtsCI	GGATG	3 cut(s)	138, 210, 709
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	20, 64
Cfr9I	CCCGGG	1 cut(s)	111
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	91, 108, 340
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	3 cut(s)	91, 108, 340
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	3 cut(s)	200, 222, 484
DpnII	GATC	3 cut(s)	198, 220, 482
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	1 cut(s)	298
FaiI	YATR	4 cut(s)	130, 219, 296, 440
FaqI	GGGAC	2 cut(s)	128, 790
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	3 cut(s)	145, 217, 716
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	770, 848
GluI	GCNGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	9, 579
HaeIII	GGCC	2 cut(s)	22, 846
HapII	CCGG	5 cut(s)	112, 124, 191, 269, 375
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	767
HindII	GTYRAC	1 cut(s)	767
HpaII	CCGG	5 cut(s)	112, 124, 191, 269, 375
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	8 cut(s)	37, 61, 148, 183, 225, 248, 384, 711
Hpy188III	TCNNGA	6 cut(s)	79, 175, 202, 269, 389, 611
Hpy8I	GTNNAC	1 cut(s)	767
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	76, 706, 724
HpyCH4III	ACNGT	2 cut(s)	46, 107
HpyCH4V	TGCA	5 cut(s)	345, 407, 413, 596, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 434
HpyF3I	CTNAG	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	298
Kpn2I	TCCGGA	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	198, 220, 482
LmnI	GCTCC	3 cut(s)	148, 233, 434
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	770, 848
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	200, 222, 484
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	3 cut(s)	198, 220, 482
MboII	GAAGA	6 cut(s)	113, 301, 334, 616, 741, 813
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	142, 310
MlyI	GAGTC	1 cut(s)	601
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	7 cut(s)	33, 55, 292, 318, 393, 424, 709
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	2 cut(s)	216, 299
MspI	CCGG	5 cut(s)	112, 124, 191, 269, 375
MspR9I	CCNGG	4 cut(s)	27, 112, 113, 124
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	133, 434
NciI	CCSGG	3 cut(s)	112, 113, 124
NdeII	GATC	3 cut(s)	198, 220, 482
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	306, 567
NmuCI	GTSAC	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	846
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	306, 567
PspPI	GGNCC	2 cut(s)	20, 64
PstI	CTGCAG	1 cut(s)	598
RsaI	GTAC	3 cut(s)	92, 109, 341
RsaNI	GTAC	3 cut(s)	91, 108, 340
RseI	CAYNNNNRTG	2 cut(s)	216, 299
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	198, 220, 482
Sau96I	GGNCC	2 cut(s)	20, 64
ScaI	AGTACT	2 cut(s)	92, 341
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	4 cut(s)	27, 112, 113, 124
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	216, 299
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	2 cut(s)	142, 310
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	2 cut(s)	151, 425
SspMI	CTAG	2 cut(s)	770, 848
SstI	GAGCTC	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	4 cut(s)	25, 110, 111, 122
TaaI	ACNGT	2 cut(s)	46, 107
TaqI	TCGA	3 cut(s)	41, 485, 602
TasI	AATT	2 cut(s)	142, 310
TatI	WGTACW	2 cut(s)	90, 339
TauI	GCSGC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	17, 155, 455
TspGWI	ACGGA	1 cut(s)	351
TspMI	CCCGGG	1 cut(s)	111
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	2 cut(s)	770, 848
ZrmI	AGTACT	2 cut(s)	92, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.