Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

50905703 .. 50906644

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG345900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATTGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGTTGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTATTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTTTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCAAATTGGGGAAGAAAACCCCCAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

139

Amino Acids

15.15

Weight (kDa)

9.79

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	33 - 69	4.1e-09	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	49, 142, 199, 239, 324
AluBI	AGCT	2 cut(s)	119, 227
AluI	AGCT	2 cut(s)	119, 227
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	406
AsuII	TTCGAA	2 cut(s)	164, 215
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	332, 410
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	141
Bpu14I	TTCGAA	2 cut(s)	164, 215
BpuEI	CTTGAG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	349
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	408
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	2 cut(s)	164, 215
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	160
BspT104I	TTCGAA	2 cut(s)	164, 215
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	287
BstBI	TTCGAA	2 cut(s)	164, 215
BstF5I	GGATG	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	73, 119, 152, 227, 398, 408
CviKI_1	RGCY	6 cut(s)	73, 119, 152, 227, 398, 408
Eco147I	AGGCCT	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	293
FaqI	GGGAC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	332, 410
GluI	GCNGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	408
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	5 cut(s)	67, 161, 169, 199, 350
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	268, 286
HpyCH4V	TGCA	2 cut(s)	158, 188
LpnPI	CCDG	5 cut(s)	105, 174, 370, 387, 413
MaeI	CTAG	2 cut(s)	332, 410
MboII	GAAGA	2 cut(s)	178, 375
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	129
NspV	TTCGAA	2 cut(s)	164, 215
PceI	AGGCCT	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	4 cut(s)	67, 161, 199, 350
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	163
SetI	ASST	5 cut(s)	57, 104, 121, 229, 337
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	2 cut(s)	164, 215
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	355
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	332, 410
StuI	AGGCCT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	164, 206, 215
TasI	AATT	1 cut(s)	355
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	4 cut(s)	67, 161, 199, 350
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	31
XspI	CTAG	2 cut(s)	332, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.