Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

5991673 .. 5993073

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGAAAACAGGGGAGAAAATGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCTGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTTCGGTCGTCGGAATCGCGACGTTGGGGAGAGTACAGTTACAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGCGGAGTTTGTCAGTGGAAGTGTTGGGACTGGATCGAATAAGGCTGCTTATGAGATTCGGCTTCTTTCGAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGGAGACTCAAGAGAATGAAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTTGAAAGGGAAAGCTATGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTAAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGGTACATTGTTTTATCTTGCTTCGATTGAGGAGTACCGGGTATTGATCAGAGAAAGTAAGAAAGAAGAACTTATAAGCAAGGAGGAAGTGACGATGAACATTCATCTTTTGCATTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

212

Amino Acids

23.16

Weight (kDa)

7.68

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	101 - 137	1e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AccB1I	GGYRCC	2 cut(s)	70, 331
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	191, 218, 335
AclWI	GGATC	1 cut(s)	256
AfaI	GTAC	4 cut(s)	107, 172, 520, 551
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	88, 346, 403, 421, 443
AluBI	AGCT	6 cut(s)	17, 186, 203, 323, 349, 431
AluI	AGCT	6 cut(s)	17, 186, 203, 323, 349, 431
Alw26I	GTCTC	2 cut(s)	365, 491
AlwI	GGATC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	260, 512
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	284
BanI	GGYRCC	2 cut(s)	70, 331
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	247, 499
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	365, 491
BfmI	CTRYAG	2 cut(s)	101, 360
BisI	GCNGC	4 cut(s)	192, 261, 335, 513
BlsI	GCNGC	4 cut(s)	193, 262, 336, 514
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	72, 333
BmrFI	CCNGG	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	247, 499
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	145
BshNI	GGYRCC	2 cut(s)	70, 331
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	365, 491
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	628
Bso31I	GGTCTC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	248, 561
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	3 cut(s)	191, 218, 335
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	72, 333
BspMAI	CTGCAG	2 cut(s)	105, 364
BspPI	GGATC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	70, 331
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	248, 561
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	502, 506, 510
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	251, 564
BstMAI	GTCTC	2 cut(s)	365, 491
BstMBI	GATC	2 cut(s)	248, 561
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	2 cut(s)	101, 360
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	247, 499
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	235
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	502, 506, 510
Csp6I	GTAC	4 cut(s)	106, 171, 519, 550
CviAII	CATG	2 cut(s)	61, 509
CviQI	GTAC	4 cut(s)	106, 171, 519, 550
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	250, 563
DpnII	GATC	2 cut(s)	248, 561
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	491
FaeI	CATG	2 cut(s)	64, 512
FaiI	YATR	6 cut(s)	62, 206, 267, 434, 510, 590
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	60, 508
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	192, 261, 335, 513
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	192, 261, 335, 513
GluI	GCNGC	4 cut(s)	192, 261, 335, 513
GsuI	CTGGAG	1 cut(s)	345
HapII	CCGG	1 cut(s)	553
Hin1II	CATG	2 cut(s)	64, 512
HinfI	GANTC	7 cut(s)	97, 124, 151, 271, 365, 373, 403
HpaII	CCGG	1 cut(s)	553
Hpy188I	TCNGA	5 cut(s)	14, 36, 150, 370, 566
Hpy188III	TCNNGA	3 cut(s)	155, 377, 636
Hpy99I	CGWCG	2 cut(s)	150, 161
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	103, 111, 362, 392, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	64, 512
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	248, 561
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	9 cut(s)	3, 27, 165, 231, 309, 378, 501, 518, 566
Lsp1109I	GCAGC	2 cut(s)	247, 499
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	175, 604
MalI	GATC	2 cut(s)	250, 563
MboI	GATC	2 cut(s)	248, 561
MboII	GAAGA	3 cut(s)	67, 100, 593
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	7 cut(s)	58, 84, 190, 475, 490, 538, 592
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	628
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	248, 561
NlaIII	CATG	2 cut(s)	64, 512
NlaIV	GGNNCC	2 cut(s)	72, 333
NmuCI	GTSAC	1 cut(s)	604
NruI	TCGCGA	1 cut(s)	156
NspI	RCATGY	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	512
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	97, 124, 151, 271, 365, 403
PkrI	GCNGC	4 cut(s)	193, 262, 336, 514
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	72, 333
PstI	CTGCAG	2 cut(s)	105, 364
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	4 cut(s)	107, 172, 520, 551
RsaNI	GTAC	4 cut(s)	106, 171, 519, 550
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	192, 261, 335, 513
Sau3AI	GATC	2 cut(s)	248, 561
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	554
SfcI	CTRYAG	2 cut(s)	101, 360
SfuI	TTCGAA	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	3 cut(s)	191, 218, 335
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	251, 284, 410, 539
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	76
TatI	WGTACW	2 cut(s)	105, 170
TauI	GCSGC	2 cut(s)	194, 337
TfiI	GAWTC	6 cut(s)	97, 124, 151, 271, 365, 403
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	260, 512
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	17, 68, 221, 399, 608, 621, 626
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.