Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Forward (+)

38296335 .. 38297054

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAATTCTCAGCCAGTTGCGAACCAGTTCCAGTTCTTGATTCTGACGGATCCGGTGACGATCGGGACAGGTCACAGTTGCGATCGGAGCTCCCTTATGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGAAAACGGGAGAGAAAATGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATAAGAATCGGAATCGCAACGTTGGGATGAGTACAGTTGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGCAGAGTTTATCAATGGAAGTGAGACTCAAGAGAATGCAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTTGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGATCTCAAAGTTGAGGCTTGCCAACATGCTGCTGGTACATTGTTTTATCTTGCTTTGATTGAGGAGTACTGGGTATTGATCAGAGAAAACCCAAGGGCCTTATTAGCTTTGAGGGAGCTGATCAAGAATGAAATCTGTTCATCTTCCGGCCACTACCATGCTCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

195

Amino Acids

21.53

Weight (kDa)

8.25

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	12 - 74	5.1e-11	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	44, 57, 426
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	4 cut(s)	203, 241, 454, 485
AfiI	CCNNNNNNNGG	2 cut(s)	137, 580
AgsI	TTSAA	4 cut(s)	184, 337, 355, 377
AluBI	AGCT	7 cut(s)	90, 113, 252, 269, 365, 524, 535
AluI	AGCT	7 cut(s)	90, 113, 252, 269, 365, 524, 535
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	44, 57, 426
AoxI	GGCC	2 cut(s)	513, 565
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	4
Asp700I	GAANNNNTTC	2 cut(s)	26, 104
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	433
BclI	TGATCA	2 cut(s)	495, 537
BcoDI	GTCTC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	258, 447
BlsI	GCNGC	2 cut(s)	259, 448
BmcAI	AGTACT	2 cut(s)	203, 485
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	51, 168
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
Bpu10I	CCTNAGC	2 cut(s)	261, 579
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	509
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 580
Bse1I	ACTGG	4 cut(s)	14, 25, 31, 491
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	2 cut(s)	240, 409
BseLI	CCNNNNNNNGG	2 cut(s)	137, 580
BseMII	CTCAG	2 cut(s)	23, 252
BseNI	ACTGG	4 cut(s)	14, 25, 31, 491
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	433
Bsh1285I	CGRYCG	2 cut(s)	63, 85
BshFI	GGCC	2 cut(s)	515, 567
BshNI	GGYRCC	1 cut(s)	166
BsiEI	CGRYCG	2 cut(s)	63, 85
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	53, 564
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	137, 580
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	515, 567
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	515, 567
BspCNI	CTCAG	2 cut(s)	22, 253
BspLI	GGNNCC	2 cut(s)	51, 168
BspPI	GGATC	3 cut(s)	44, 57, 426
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	4 cut(s)	14, 25, 31, 491
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
BssT1I	CCWWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	77, 244
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	3 cut(s)	9, 261, 579
BstF5I	GGATG	2 cut(s)	240, 409
BstKTI	GATC	6 cut(s)	52, 63, 85, 421, 498, 540
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
BstMCI	CGRYCG	2 cut(s)	63, 85
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 266, 521
BstNSI	RCATGY	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	49, 418
BstYI	RGATCY	2 cut(s)	49, 418
BsuRI	GGCC	2 cut(s)	515, 567
BtsCI	GGATG	2 cut(s)	240, 409
Cac8I	GCNNGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	513
Csp6I	GTAC	4 cut(s)	202, 240, 453, 484
CviAII	CATG	3 cut(s)	157, 443, 575
CviQI	GTAC	4 cut(s)	202, 240, 453, 484
DdeI	CTNAG	3 cut(s)	9, 261, 579
DpnI	GATC	6 cut(s)	51, 62, 84, 420, 497, 539
DpnII	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	3 cut(s)	160, 446, 578
FaiI	YATR	5 cut(s)	98, 158, 272, 444, 576
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	156, 442, 574
FbaI	TGATCA	2 cut(s)	495, 537
Fnu4HI	GCNGC	2 cut(s)	258, 447
FokI	GGATG	2 cut(s)	247, 416
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	258, 447
GluI	GCNGC	2 cut(s)	258, 447
HaeIII	GGCC	2 cut(s)	515, 567
HapII	CCGG	2 cut(s)	53, 564
Hin1II	CATG	3 cut(s)	160, 446, 578
HinfI	GANTC	6 cut(s)	40, 193, 214, 220, 307, 337
HpaII	CCGG	2 cut(s)	53, 564
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	7 cut(s)	45, 87, 110, 132, 219, 411, 500
Hpy188III	TCNNGA	5 cut(s)	37, 64, 311, 541, 581
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	77, 244
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	207, 320, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 266, 521
HpyF3I	CTNAG	3 cut(s)	9, 261, 579
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	160, 446, 578
Ksp22I	TGATCA	2 cut(s)	495, 537
Kzo9I	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
LmnI	GCTCC	4 cut(s)	87, 95, 266, 532
Lsp1109I	GCAGC	1 cut(s)	433
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	55, 71
MalI	GATC	6 cut(s)	51, 62, 84, 420, 497, 539
MboI	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
MboII	GAAGA	3 cut(s)	163, 196, 552
MflI	RGATCY	2 cut(s)	49, 418
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	4, 172
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	7 cut(s)	154, 180, 256, 409, 424, 472, 522
MroXI	GAANNNNTTC	2 cut(s)	26, 104
MseI	TTAA	1 cut(s)	586
MslI	CAYNNNNRTG	2 cut(s)	161, 573
MspI	CCGG	2 cut(s)	53, 564
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	87, 266, 521
NdeII	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
NlaIII	CATG	3 cut(s)	160, 446, 578
NlaIV	GGNNCC	2 cut(s)	51, 168
NmuCI	GTSAC	2 cut(s)	55, 71
NspI	RCATGY	1 cut(s)	446
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	2 cut(s)	26, 104
PfeI	GAWTC	5 cut(s)	40, 193, 214, 220, 337
PkrI	GCNGC	2 cut(s)	259, 448
Ple19I	CGATCG	2 cut(s)	63, 85
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	51, 168
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	2 cut(s)	49, 418
PvuI	CGATCG	2 cut(s)	63, 85
RsaI	GTAC	4 cut(s)	203, 241, 454, 485
RsaNI	GTAC	4 cut(s)	202, 240, 453, 484
RseI	CAYNNNNRTG	2 cut(s)	161, 573
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	2 cut(s)	258, 447
Sau3AI	GATC	6 cut(s)	49, 60, 82, 418, 495, 537
Sau96I	GGNCC	1 cut(s)	513
ScaI	AGTACT	2 cut(s)	203, 485
SchI	GAGTC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	161, 573
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	4, 172
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	77, 244
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	4, 172
TatI	WGTACW	3 cut(s)	201, 239, 483
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	5 cut(s)	40, 193, 214, 220, 337
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TseFI	GTSAC	2 cut(s)	55, 71
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	55, 71
TspDTI	ATGAA	6 cut(s)	17, 113, 164, 287, 546, 561
TspGWI	ACGGA	1 cut(s)	62
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	2 cut(s)	26, 104
ZrmI	AGTACT	2 cut(s)	203, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.