Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

33520630 .. 33522074

Gene Structure 1445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTAGGGTGGTTTGTGCAGGAACCAACACCCTCAAATGTTGCAAGTGTTTCATCTCAACTAGTGATCTCATCACCATATCTGACTCAAGGTCCATTTGGCTTGCTGGAAAACTGTACCCGGGACAATGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGTGAACCAGTTTTGGGTCTTGAATCTGACGGATCCAGTGATGATCGGGATGGGTCACAGCTACGATCGGAGCTCCATTATGAAGTGGTTCAGTGCTGGAAAGCCGATTTGTCCGGAAACAGGGGAGAAAACGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTGAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTAGGATTGGATTGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGGTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTTTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCAAATTGGGGAAGAAAACCCCTAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

289

Amino Acids

31.59

Weight (kDa)

9.16

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	64 - 121	3e-10	U-box domain
Arm	PF00514	182 - 218	1.4e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	313, 574
AccBSI	CCGCTC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	3 cut(s)	160, 434, 578
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	2 cut(s)	118, 350
AfiI	CCNNNNNNNGG	4 cut(s)	138, 178, 284, 390
AgsI	TTSAA	7 cut(s)	187, 331, 496, 589, 646, 686, 771
AhdI	GACNNNNNGTC	1 cut(s)	90
AhlI	ACTAGT	1 cut(s)	61
AluBI	AGCT	7 cut(s)	225, 237, 429, 446, 566, 592, 674
AluI	AGCT	7 cut(s)	225, 237, 429, 446, 566, 592, 674
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	191, 204
Ama87I	CYCGRG	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	853
ApoI	RAATTY	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	3 cut(s)	121, 122, 133
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	2 cut(s)	611, 662
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	2 cut(s)	313, 574
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	208, 707
BcnI	CCSGG	3 cut(s)	121, 122, 133
BcoDI	GTCTC	1 cut(s)	734
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	4 cut(s)	62, 779, 821, 857
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	2 cut(s)	435, 578
BlsI	GCNGC	2 cut(s)	436, 579
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	3 cut(s)	121, 122, 133
Bme18I	GGWCC	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	4 cut(s)	24, 198, 315, 576
BmrFI	CCNGG	3 cut(s)	121, 122, 133
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	611, 662
BpuEI	CTTGAG	2 cut(s)	72, 603
BpuMI	CCSGG	3 cut(s)	121, 122, 133
BsaBI	GATNNNNATC	1 cut(s)	796
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	277, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 178, 284, 390
Bse1I	ACTGG	2 cut(s)	172, 200
Bse3DI	GCAATG	1 cut(s)	361
Bse8I	GATNNNNATC	1 cut(s)	796
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	147, 219, 718
BseJI	GATNNNNATC	1 cut(s)	796
BseLI	CCNNNNNNNGG	4 cut(s)	138, 178, 284, 390
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	172, 200
BseRI	GAGGAG	1 cut(s)	424
BsgI	GTGCAG	2 cut(s)	38, 435
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	855
BshNI	GGYRCC	2 cut(s)	313, 574
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	121, 133, 278, 384
BslFI	GGGAC	2 cut(s)	137, 799
BslI	CCNNNNNNNGG	4 cut(s)	138, 178, 284, 390
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	137, 799
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	855
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	2 cut(s)	611, 662
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	66, 196, 207, 229
BspACI	CCGC	3 cut(s)	160, 434, 578
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	1 cut(s)	430
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	24, 198, 315, 576
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	191, 204
BspT104I	TTCGAA	2 cut(s)	611, 662
BspT107I	GGYRCC	2 cut(s)	313, 574
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	172, 200
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	66, 196, 207, 229
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	326
BstBI	TTCGAA	2 cut(s)	611, 662
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	147, 219, 718
BstKTI	GATC	4 cut(s)	69, 199, 210, 232
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	66, 196, 207, 229
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 443
BstSCI	CCNGG	3 cut(s)	119, 120, 131
BstSFI	CTRYAG	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	855
BtsCI	GGATG	3 cut(s)	147, 219, 718
BtsIMutI	CAGTG	3 cut(s)	207, 262, 478
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	92
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	117, 349
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	2 cut(s)	117, 349
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	68, 198, 209, 231
DpnII	GATC	4 cut(s)	66, 196, 207, 229
DriI	GACNNNNNGTC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	326
Eam1105I	GACNNNNNGTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	307
FaiI	YATR	5 cut(s)	79, 139, 245, 305, 449
FaqI	GGGAC	2 cut(s)	137, 799
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	435, 578
FokI	GGATG	3 cut(s)	154, 226, 725
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	435, 578
FspBI	CTAG	4 cut(s)	62, 779, 821, 857
GluI	GCNGC	2 cut(s)	435, 578
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	4 cut(s)	121, 133, 278, 384
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HpaII	CCGG	4 cut(s)	121, 133, 278, 384
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	169, 776
Hpy188I	TCNGA	6 cut(s)	84, 157, 192, 234, 393, 720
Hpy188III	TCNNGA	5 cut(s)	184, 211, 278, 398, 620
Hpy8I	GTNNAC	2 cut(s)	169, 776
HpyAV	CCTTC	2 cut(s)	715, 733
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	7 cut(s)	19, 44, 354, 416, 422, 605, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 443
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	307
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	66, 196, 207, 229
LmnI	GCTCC	4 cut(s)	157, 234, 242, 443
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	4 cut(s)	62, 779, 821, 857
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	4 cut(s)	68, 198, 209, 231
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	4 cut(s)	66, 196, 207, 229
MboII	GAAGA	4 cut(s)	310, 343, 625, 822
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	3 cut(s)	151, 319, 802
MlyI	GAGTC	2 cut(s)	79, 610
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	43, 301, 327, 402, 433, 718
MroI	TCCGGA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	4 cut(s)	121, 133, 278, 384
MspR9I	CCNGG	3 cut(s)	121, 122, 133
Mva1269I	GAATGC	1 cut(s)	658
MwoI	GCNNNNNNNGC	2 cut(s)	142, 443
NciI	CCSGG	3 cut(s)	121, 122, 133
NdeII	GATC	4 cut(s)	66, 196, 207, 229
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	4 cut(s)	24, 198, 315, 576
NmuCI	GTSAC	1 cut(s)	218
NspV	TTCGAA	2 cut(s)	611, 662
PceI	AGGCCT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	659
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	8 cut(s)	187, 367, 380, 394, 514, 608, 646, 797
PkrI	GCNGC	2 cut(s)	436, 579
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	2 cut(s)	79, 610
PpsI	GAGTC	2 cut(s)	79, 610
Psp124BI	GAGCTC	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	24, 198, 315, 576
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	196
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	118, 350
RsaNI	GTAC	2 cut(s)	117, 349
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	2 cut(s)	435, 578
Sau3AI	GATC	4 cut(s)	66, 196, 207, 229
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	2 cut(s)	79, 610
ScrFI	CCNGG	3 cut(s)	121, 122, 133
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	603
SfuI	TTCGAA	2 cut(s)	611, 662
SinI	GGWCC	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	87, 618
SmoI	CTYRAG	2 cut(s)	87, 618
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	3 cut(s)	151, 319, 802
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	3 cut(s)	160, 434, 578
SspMI	CTAG	4 cut(s)	62, 779, 821, 857
SstI	GAGCTC	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	3 cut(s)	119, 120, 131
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	611, 653, 662
TasI	AATT	3 cut(s)	151, 319, 802
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	2 cut(s)	437, 580
TfiI	GAWTC	8 cut(s)	187, 367, 380, 394, 514, 608, 646, 797
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	3 cut(s)	207, 262, 478
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	42, 164, 260, 464
TspGWI	ACGGA	2 cut(s)	209, 360
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	3 cut(s)	207, 262, 478
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	151
XmaI	CCCGGG	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	4 cut(s)	62, 779, 821, 857
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.