Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

65366349 .. 65367437

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGGGTATTTTTGTCTATTCATGTCTTAACTCAATTTTTTTTTTTTTGAATAAAATCTTAAAATCAATCTTTATGTTTCTGTTCATGTTCCTCTCTCTGCAAATCATGAAATCCAGAAGAAAGAATAGGGACCTTAAGTCTCTCTCTCTCTCTGTCATTTTTCTCATGAAATCTGGAAACTTTCAAAAATTAAAAAACCATAAGTCTCCAAACTTCCTTTTACAGATTTCAAAAGAGATCCAGGCTGGGCCTCCAGGTCTTTCAGATTCGACCGTTTTGAGCTTCTCGGAGGTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCAGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAATCAGTTTTGGGTCTTGAATCTGACCGATCCGGTGACGATCGAGATGGGTCACAGCTACAATCGGAGCTCCATTACGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGGAAACAGGGGAGAAAACGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGCAGTTTGTCAGTGGTAGTGTTGGGATTGGATCGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTTTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCAAATTGGGGAAGAAAACCCCTAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

362

Amino Acids

40.43

Weight (kDa)

9.68

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	138 - 195	2.4e-09	U-box domain
Arm	PF00514	256 - 292	1.9e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	635
AccB1I	GGYRCC	2 cut(s)	535, 796
AccBSI	CCGCTC	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	3 cut(s)	382, 656, 800
AclWI	GGATC	3 cut(s)	235, 413, 721
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	962
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	3 cut(s)	323, 340, 572
AfiI	CCNNNNNNNGG	3 cut(s)	360, 506, 612
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	9 cut(s)	52, 188, 234, 409, 553, 811, 868, 908, 993
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	243, 256
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	147, 213, 956
AlwI	GGATC	3 cut(s)	235, 413, 721
Ama87I	CYCGRG	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	2 cut(s)	251, 1075
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	133, 251, 295
AsuC2I	CCSGG	2 cut(s)	343, 344
AsuHPI	GGTGA	1 cut(s)	436
AsuII	TTCGAA	2 cut(s)	833, 884
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	2 cut(s)	133, 295
BanI	GGYRCC	2 cut(s)	535, 796
BanII	GRGCYC	1 cut(s)	461
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	2 cut(s)	339, 842
Bbv12I	GWGCWC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	660
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	2 cut(s)	245, 258
BcnI	CCSGG	2 cut(s)	343, 344
BcoDI	GTCTC	3 cut(s)	147, 213, 956
BfaI	CTAG	3 cut(s)	1001, 1043, 1079
BfmI	CTRYAG	1 cut(s)	825
BfrI	CTTAAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	635
BisI	GCNGC	2 cut(s)	657, 800
BlsI	GCNGC	2 cut(s)	658, 801
BmcAI	AGTACT	2 cut(s)	323, 572
Bme1390I	CCNGG	4 cut(s)	245, 258, 343, 344
Bme18I	GGWCC	2 cut(s)	133, 295
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	133, 251, 295
BmiI	GGNNCC	3 cut(s)	134, 537, 798
BmrFI	CCNGG	4 cut(s)	245, 258, 343, 344
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	2 cut(s)	339, 842
BpmI	CTGGAG	2 cut(s)	240, 810
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	2 cut(s)	833, 884
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	2 cut(s)	343, 344
BsaBI	GATNNNNATC	1 cut(s)	1018
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	3 cut(s)	421, 499, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 506, 612
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	1 cut(s)	1018
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	245, 258
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	369, 940
BseJI	GATNNNNATC	1 cut(s)	1018
BseLI	CCNNNNNNNGG	3 cut(s)	360, 506, 612
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	1 cut(s)	646
BseYI	CCCAGC	2 cut(s)	248, 354
BsgI	GTGCAG	2 cut(s)	657, 704
Bsh1285I	CGRYCG	2 cut(s)	276, 432
BshFI	GGCC	2 cut(s)	253, 1077
BshNI	GGYRCC	2 cut(s)	535, 796
BsiEI	CGRYCG	2 cut(s)	276, 432
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	343, 422, 500, 606
BslFI	GGGAC	3 cut(s)	146, 359, 1021
BslI	CCNNNNNNNGG	3 cut(s)	360, 506, 612
BsmAI	GTCTC	3 cut(s)	147, 213, 956
BsmFI	GGGAC	3 cut(s)	146, 359, 1021
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	2 cut(s)	253, 1077
Bso31I	GGTCTC	1 cut(s)	956
BsoBI	CYCGRG	1 cut(s)	342
Bsp119I	TTCGAA	2 cut(s)	833, 884
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	240, 418, 429, 713
BspACI	CCGC	3 cut(s)	382, 656, 800
BspANI	GGCC	2 cut(s)	253, 1077
BspCNI	CTCAG	1 cut(s)	652
BspEI	TCCGGA	1 cut(s)	499
BspHI	TCATGA	2 cut(s)	108, 168
BspLI	GGNNCC	3 cut(s)	134, 537, 798
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	235, 413, 721
BspT104I	TTCGAA	2 cut(s)	833, 884
BspT107I	GGYRCC	2 cut(s)	535, 796
BspTI	CTTAAG	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	956
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	240, 418, 429, 713
BssNI	GRCGYC	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	245, 258
Bst4CI	ACNGT	2 cut(s)	277, 338
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	137
BstBI	TTCGAA	2 cut(s)	833, 884
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	369, 940
BstKTI	GATC	4 cut(s)	243, 421, 432, 716
BstMAI	GTCTC	3 cut(s)	147, 213, 956
BstMBI	GATC	4 cut(s)	240, 418, 429, 713
BstMCI	CGRYCG	2 cut(s)	276, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 665
BstNI	CCWGG	2 cut(s)	245, 258
BstSCI	CCNGG	4 cut(s)	243, 256, 341, 342
BstSFI	CTRYAG	1 cut(s)	825
BstV2I	GAAGAC	2 cut(s)	339, 842
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	253, 1077
BtsCI	GGATG	2 cut(s)	369, 940
BtsIMutI	CAGTG	1 cut(s)	700
BveI	ACCTGC	1 cut(s)	635
CciI	TCATGA	2 cut(s)	108, 168
Cfr13I	GGNCC	3 cut(s)	133, 251, 295
Cfr9I	CCCGGG	1 cut(s)	342
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	322, 339, 571
CviAII	CATG	5 cut(s)	24, 88, 109, 169, 526
CviQI	GTAC	3 cut(s)	322, 339, 571
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	4 cut(s)	242, 420, 431, 715
DpnII	GATC	4 cut(s)	240, 418, 429, 713
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	548
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	1077
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	956
Eco47I	GGWCC	2 cut(s)	133, 295
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	962
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	243, 256
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	5 cut(s)	27, 91, 112, 172, 529
FaiI	YATR	9 cut(s)	25, 77, 89, 110, 170, 204, 361, 527, 671
FaqI	GGGAC	3 cut(s)	146, 359, 1021
FatI	CATG	5 cut(s)	23, 87, 108, 168, 525
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	657, 800
FokI	GGATG	2 cut(s)	376, 947
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	2 cut(s)	657, 800
FspBI	CTAG	3 cut(s)	1001, 1043, 1079
GluI	GCNGC	2 cut(s)	657, 800
GsaI	CCCAGC	2 cut(s)	252, 358
GsuI	CTGGAG	2 cut(s)	240, 810
HaeIII	GGCC	2 cut(s)	253, 1077
HapII	CCGG	4 cut(s)	343, 422, 500, 606
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	27, 91, 112, 172, 529
HincII	GTYRAC	1 cut(s)	998
HindII	GTYRAC	1 cut(s)	998
HpaII	CCGG	4 cut(s)	343, 422, 500, 606
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	998
Hpy188I	TCNGA	8 cut(s)	268, 292, 379, 414, 456, 479, 615, 942
Hpy8I	GTNNAC	1 cut(s)	998
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	307, 937, 955
HpyCH4III	ACNGT	2 cut(s)	277, 338
HpyCH4V	TGCA	7 cut(s)	103, 576, 638, 644, 685, 827, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 665
HpyF3I	CTNAG	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	27, 91, 112, 172, 529
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	240, 418, 429, 713
LmnI	GCTCC	4 cut(s)	379, 456, 464, 665
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	1001, 1043, 1079
MaeIII	GTNAC	2 cut(s)	424, 440
MalI	GATC	4 cut(s)	242, 420, 431, 715
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	4 cut(s)	240, 418, 429, 713
MboII	GAAGA	6 cut(s)	132, 344, 532, 565, 847, 1044
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	5 cut(s)	36, 191, 373, 541, 1024
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	8 cut(s)	104, 264, 286, 523, 549, 624, 655, 940
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	5 cut(s)	30, 62, 138, 194, 765
MslI	CAYNNNNRTG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	4 cut(s)	343, 422, 500, 606
MspR9I	CCNGG	4 cut(s)	245, 258, 343, 344
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	245, 258
MwoI	GCNNNNNNNGC	2 cut(s)	364, 665
NciI	CCSGG	2 cut(s)	343, 344
NdeII	GATC	4 cut(s)	240, 418, 429, 713
NlaIII	CATG	5 cut(s)	27, 91, 112, 172, 529
NlaIV	GGNNCC	3 cut(s)	134, 537, 798
NmuCI	GTSAC	2 cut(s)	424, 440
NspV	TTCGAA	2 cut(s)	833, 884
PagI	TCATGA	2 cut(s)	108, 168
PceI	AGGCCT	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	881
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	658, 801
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PpuMI	RGGWCCY	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	243, 256
PspFI	CCCAGC	2 cut(s)	248, 354
PspGI	CCWGG	2 cut(s)	243, 256
PspN4I	GGNNCC	3 cut(s)	134, 537, 798
PspPI	GGNCC	3 cut(s)	133, 251, 295
PspPPI	RGGWCCY	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	240
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	3 cut(s)	323, 340, 572
RsaNI	GTAC	3 cut(s)	322, 339, 571
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	5 cut(s)	30, 62, 138, 194, 765
SatI	GCNGC	2 cut(s)	657, 800
Sau3AI	GATC	4 cut(s)	240, 418, 429, 713
Sau96I	GGNCC	3 cut(s)	133, 251, 295
ScaI	AGTACT	2 cut(s)	323, 572
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	4 cut(s)	245, 258, 343, 344
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	2 cut(s)	833, 884
SinI	GGWCC	2 cut(s)	133, 295
SmaI	CCCGGG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	137, 840
SmoI	CTYRAG	2 cut(s)	137, 840
Sse9I	AATT	5 cut(s)	36, 191, 373, 541, 1024
SseBI	AGGCCT	1 cut(s)	1077
SsiI	CCGC	3 cut(s)	382, 656, 800
SspMI	CTAG	3 cut(s)	1001, 1043, 1079
SstI	GAGCTC	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	1077
StyD4I	CCNGG	4 cut(s)	243, 256, 341, 342
TaaI	ACNGT	2 cut(s)	277, 338
TaqI	TCGA	6 cut(s)	272, 432, 716, 833, 875, 884
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	36, 191, 373, 541, 1024
TatI	WGTACW	2 cut(s)	321, 570
TauI	GCSGC	2 cut(s)	659, 802
Tru1I	TTAA	5 cut(s)	30, 62, 138, 194, 765
Tru9I	TTAA	5 cut(s)	30, 62, 138, 194, 765
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	2 cut(s)	424, 440
Tsp45I	GTSAC	2 cut(s)	424, 440
TspDTI	ATGAA	7 cut(s)	12, 17, 76, 125, 185, 386, 686
TspGWI	ACGGA	1 cut(s)	582
TspMI	CCCGGG	1 cut(s)	342
TspRI	CASTG	1 cut(s)	700
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	133, 295
XapI	RAATTY	1 cut(s)	373
XmaI	CCCGGG	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	1001, 1043, 1079
ZrmI	AGTACT	2 cut(s)	323, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.