Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

47758557 .. 47759071

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGATCGTCGGAATAGCGATATTGGGAGGAGTACAGTTGCAGGTAGCTTGGCGACTGAGGGAGCTATGAAAATGGTGGCGGAGTTTGTCAGTGGAAAAGCTGGAGTGGTACCACATTTGTTGAAGCTGTTTGCTTCTGCAGATTCGGAGACTCAAGAGAATGAAGTTGCAGGGTTGTTGAATTTGTCAAAGCATTCGAAACGAAAAGCTATGATTGTTGAAAATGGCGGTGTGGATTTGGTTGTGGATGTTCTAAAGGAAGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGGAGTATCGGGTATTGATCGGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

134

Amino Acids

14.2

Weight (kDa)

6.83

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	2 cut(s)	10, 187
AciI	CCGC	2 cut(s)	158, 306
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	3 cut(s)	47, 112, 189
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	28, 202, 259, 299
AluBI	AGCT	5 cut(s)	126, 143, 179, 205, 287
AluI	AGCT	5 cut(s)	126, 143, 179, 205, 287
Alw26I	GTCTC	2 cut(s)	221, 347
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	275
BanI	GGYRCC	2 cut(s)	10, 187
BbvI	GCAGC	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	221, 347
BfmI	CTRYAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmcAI	AGTACT	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	12, 189
BpmI	CTGGAG	2 cut(s)	201, 393
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	81
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	85
BshNI	GGYRCC	2 cut(s)	10, 187
BsiEI	CGRYCG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	221, 347
BsmI	GAATGC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	82, 388
BspACI	CCGC	2 cut(s)	158, 306
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	12, 189
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	2 cut(s)	10, 187
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	58
BssMI	GATC	2 cut(s)	82, 388
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	358, 362, 366
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	85, 391
BstMAI	GTCTC	2 cut(s)	221, 347
BstMBI	GATC	2 cut(s)	82, 388
BstMCI	CGRYCG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	358, 362, 366
Csp6I	GTAC	3 cut(s)	46, 111, 188
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	6 cut(s)	126, 143, 179, 205, 287, 356
CviKI_1	RGCY	6 cut(s)	126, 143, 179, 205, 287, 356
CviQI	GTAC	3 cut(s)	46, 111, 188
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	84, 390
DpnII	GATC	2 cut(s)	82, 388
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	347
FaeI	CATG	1 cut(s)	368
FaiI	YATR	3 cut(s)	146, 290, 366
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	2 cut(s)	201, 393
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	5 cut(s)	37, 64, 77, 221, 229
Hpy188I	TCNGA	4 cut(s)	82, 90, 226, 393
Hpy188III	TCNNGA	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	51, 119, 218, 248
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	191
Kzo9I	GATC	2 cut(s)	82, 388
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	5 cut(s)	105, 165, 234, 357, 374
Lsp1109I	GCAGC	1 cut(s)	355
MalI	GATC	2 cut(s)	84, 390
MboI	GATC	2 cut(s)	82, 388
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	2 cut(s)	16, 259
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	24, 99, 130, 346
Mva1269I	GAATGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	82, 388
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	12, 189
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	4 cut(s)	37, 64, 77, 221
PkrI	GCNGC	1 cut(s)	370
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	12, 189
PstI	CTGCAG	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	47, 112, 189
RsaNI	GTAC	3 cut(s)	46, 111, 188
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	82, 388
ScaI	AGTACT	1 cut(s)	47
SchI	GAGTC	1 cut(s)	223
SetI	ASST	9 cut(s)	9, 35, 124, 128, 145, 181, 207, 289, 343
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	2 cut(s)	16, 259
SsiI	CCGC	2 cut(s)	158, 306
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	275
TasI	AATT	2 cut(s)	16, 259
TatI	WGTACW	2 cut(s)	45, 110
TfiI	GAWTC	4 cut(s)	37, 64, 77, 221
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	161, 255
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.