Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

66329423 .. 66330568

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG493700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAATTTGGAAACGTTCAAAAATTAAAGAACCATAAGTCTCCAAACTTCCTTCTGCAGATTTCATTCGGGTTTTTTTGGAAGAGATCCAGGTTCGGCCCGGGTCTTCCGGATTCGACCGTTTTGAACTTCACGGAGCTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGCAAGACTGGACCAGGGACAACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAACCAGTTTCGGGTCTTGATTCTGACGGATCCGGTGACGATTGGGACTGGTCACAGCTACGATCAGAGCTCCATTATGAAGTGGTTTAGAGCTGGAAAGCCGATTTGTCCGAAAACAGGGGAGAAAATGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCTGGTCTTCGGAAGCGCGACATTGGGAGGAGTACAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGCGGAGTTTGTCAGTGGAAGTGTTGGGACTGGATCGAATAAGGCTGCTTATGAGATTCGGCTTCTTTCGAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGGAGACTCAAGAGAATGCAGTTGCAAGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTAGATGTTCTGAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGATACATTGTTTTATCTTGCTTCGATTGAGGAGTACCTGGTATTGATCGGAGAAAACCCGAGGGCCATACCGGCTTTGAGGGAGCTGATCAAGAATGAAATCTGTTCATCTTCCGGCCACGACGACCACGCTCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

321

Amino Acids

35.55

Weight (kDa)

8.98

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	85 - 143	6.6e-11	U-box domain
Arm	PF00514	204 - 240	5.1e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	2 cut(s)	379, 640
AccBSI	CCGCTC	1 cut(s)	226
AccII	CGCG	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	4 cut(s)	226, 500, 527, 644
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	4 cut(s)	81, 257, 270, 565
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	5, 217
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	4 cut(s)	167, 416, 481, 860
AfiI	CCNNNNNNNGG	4 cut(s)	204, 244, 350, 958
AgsI	TTSAA	6 cut(s)	20, 127, 397, 655, 712, 752
AjnI	CCWGG	3 cut(s)	89, 185, 861
Alw21I	GWGCWC	2 cut(s)	141, 305
Alw26I	GTCTC	3 cut(s)	45, 674, 800
AlwI	GGATC	4 cut(s)	81, 257, 270, 565
Ama87I	CYCGRG	2 cut(s)	100, 883
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	3 cut(s)	97, 888, 940
ApeKI	GCWGC	3 cut(s)	172, 569, 821
ApoI	RAATTY	2 cut(s)	5, 217
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	98, 183, 888
AsuC2I	CCSGG	3 cut(s)	101, 102, 199
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	2 cut(s)	593, 728
AvaI	CYCGRG	2 cut(s)	100, 883
AvaII	GGWCC	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	2 cut(s)	379, 640
BanII	GRGCYC	2 cut(s)	141, 305
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	2 cut(s)	98, 446
Bbv12I	GWGCWC	2 cut(s)	141, 305
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	159, 556, 808
BciT130I	CCWGG	3 cut(s)	91, 187, 863
BclI	TGATCA	1 cut(s)	912
BcnI	CCSGG	3 cut(s)	101, 102, 199
BcoDI	GTCTC	3 cut(s)	45, 674, 800
BfmI	CTRYAG	2 cut(s)	56, 669
BfuAI	ACCTGC	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	896
BisI	GCNGC	5 cut(s)	173, 501, 570, 644, 822
BlsI	GCNGC	5 cut(s)	174, 502, 571, 645, 823
BmcAI	AGTACT	2 cut(s)	167, 416
Bme1390I	CCNGG	6 cut(s)	91, 101, 102, 187, 199, 863
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	2 cut(s)	100, 883
BmgT120I	GGNCC	3 cut(s)	98, 183, 888
BmiI	GGNNCC	3 cut(s)	264, 381, 642
BmrFI	CCNGG	6 cut(s)	91, 101, 102, 187, 199, 863
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	98, 446
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	2 cut(s)	504, 957
Bpu14I	TTCGAA	2 cut(s)	593, 728
BpuEI	CTTGAG	1 cut(s)	669
BpuMI	CCSGG	3 cut(s)	101, 102, 199
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	3 cut(s)	100, 186, 884
BsaWI	WCCGGW	2 cut(s)	109, 265
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 244, 350, 958
Bse118I	RCCGGY	1 cut(s)	895
Bse1I	ACTGG	4 cut(s)	185, 238, 286, 559
Bse3DI	GCAATG	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	91, 187, 863
BseDI	CCNNGG	3 cut(s)	100, 186, 884
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	4 cut(s)	204, 244, 350, 958
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	4 cut(s)	185, 238, 286, 559
BseRI	GAGGAG	2 cut(s)	490, 869
BseXI	GCAGC	3 cut(s)	159, 556, 808
Bsh1236I	CGCG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	99, 890, 942
BshNI	GGYRCC	2 cut(s)	379, 640
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	141, 305
BsiHKCI	CYCGRG	2 cut(s)	100, 883
BsiSI	CCGG	6 cut(s)	101, 110, 199, 266, 896, 939
BslFI	GGGAC	3 cut(s)	203, 292, 565
BslI	CCNNNNNNNGG	4 cut(s)	204, 244, 350, 958
BsmAI	GTCTC	3 cut(s)	45, 674, 800
BsmFI	GGGAC	3 cut(s)	203, 292, 565
BsmI	GAATGC	2 cut(s)	697, 724
BsnI	GGCC	3 cut(s)	99, 890, 942
Bso31I	GGTCTC	1 cut(s)	800
BsoBI	CYCGRG	2 cut(s)	100, 883
Bsp119I	TTCGAA	2 cut(s)	593, 728
Bsp1286I	GDGCHC	2 cut(s)	141, 305
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
BspACI	CCGC	4 cut(s)	226, 500, 527, 644
BspANI	GGCC	3 cut(s)	99, 890, 942
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	264, 381, 642
BspMAI	CTGCAG	2 cut(s)	60, 673
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	81, 257, 270, 565
BspT104I	TTCGAA	2 cut(s)	593, 728
BspT107I	GGYRCC	2 cut(s)	379, 640
BspTNI	GGTCTC	1 cut(s)	800
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	895
BsrI	ACTGG	4 cut(s)	185, 238, 286, 559
BssAI	RCCGGY	1 cut(s)	895
BssECI	CCNNGG	3 cut(s)	100, 186, 884
BssMI	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
Bst2UI	CCWGG	3 cut(s)	91, 187, 863
Bst4CI	ACNGT	2 cut(s)	121, 484
Bst6I	CTCTTC	2 cut(s)	77, 392
BstBI	TTCGAA	2 cut(s)	593, 728
BstC8I	GCNNGC	3 cut(s)	811, 815, 819
BstDEI	CTNAG	2 cut(s)	504, 957
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	6 cut(s)	89, 265, 298, 560, 873, 915
BstMAI	GTCTC	3 cut(s)	45, 674, 800
BstMBI	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 509, 896
BstNI	CCWGG	3 cut(s)	91, 187, 863
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	6 cut(s)	89, 99, 100, 185, 197, 861
BstSFI	CTRYAG	2 cut(s)	56, 669
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	159, 556, 808
BstV2I	GAAGAC	2 cut(s)	98, 446
BstX2I	RGATCY	2 cut(s)	86, 262
BstYI	RGATCY	2 cut(s)	86, 262
BsuRI	GGCC	3 cut(s)	99, 890, 942
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	811, 815, 819
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	895
Cfr13I	GGNCC	3 cut(s)	98, 183, 888
Cfr9I	CCCGGG	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	861
Csp6I	GTAC	4 cut(s)	166, 415, 480, 859
CviAII	CATG	2 cut(s)	370, 818
CviQI	GTAC	4 cut(s)	166, 415, 480, 859
DdeI	CTNAG	2 cut(s)	504, 957
DpnI	GATC	6 cut(s)	88, 264, 297, 559, 872, 914
DpnII	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	2 cut(s)	77, 392
EarI	CTCTTC	2 cut(s)	77, 392
EciI	GGCGGA	1 cut(s)	542
Ecl136II	GAGCTC	2 cut(s)	139, 303
Eco24I	GRGCYC	2 cut(s)	141, 305
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	2 cut(s)	139, 303
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	2 cut(s)	100, 883
EcoICRI	GAGCTC	2 cut(s)	139, 303
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	89, 185, 861
EcoT38I	GRGCYC	2 cut(s)	141, 305
FaeI	CATG	2 cut(s)	373, 821
FaiI	YATR	8 cut(s)	36, 205, 311, 371, 515, 576, 819, 893
FaqI	GGGAC	3 cut(s)	203, 292, 565
FatI	CATG	2 cut(s)	369, 817
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	912
Fnu4HI	GCNGC	5 cut(s)	173, 501, 570, 644, 822
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	141, 305
Fsp4HI	GCNGC	5 cut(s)	173, 501, 570, 644, 822
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	173, 501, 570, 644, 822
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	99, 890, 942
HapII	CCGG	6 cut(s)	101, 110, 199, 266, 896, 939
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	373, 821
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	9 cut(s)	113, 253, 406, 433, 446, 580, 674, 682, 712
HpaII	CCGG	6 cut(s)	101, 110, 199, 266, 896, 939
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	8 cut(s)	223, 258, 300, 345, 459, 679, 786, 875
Hpy188III	TCNNGA	6 cut(s)	110, 154, 250, 686, 916, 959
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	3 cut(s)	62, 151, 781
HpyCH4III	ACNGT	2 cut(s)	121, 484
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	58, 175, 420, 488, 671, 695, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 509, 896
HpyF3I	CTNAG	2 cut(s)	504, 957
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	373, 821
HspAI	GCGC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
LmnI	GCTCC	6 cut(s)	136, 144, 223, 308, 509, 907
Lsp1109I	GCAGC	3 cut(s)	159, 556, 808
LweI	GCATC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	861
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	268, 284
MalI	GATC	6 cut(s)	88, 264, 297, 559, 872, 914
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
MboII	GAAGA	6 cut(s)	94, 98, 376, 409, 446, 927
MflI	RGATCY	2 cut(s)	86, 262
MhlI	GDGCHC	2 cut(s)	141, 305
MluCI	AATT	4 cut(s)	5, 23, 217, 385
MlyI	GAGTC	1 cut(s)	676
MnlI	CCTC	9 cut(s)	367, 393, 468, 499, 784, 799, 847, 879, 897
MroI	TCCGGA	1 cut(s)	109
MseI	TTAA	3 cut(s)	26, 609, 964
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	6 cut(s)	101, 110, 199, 266, 896, 939
MspR9I	CCNGG	6 cut(s)	91, 101, 102, 187, 199, 863
Mva1269I	GAATGC	2 cut(s)	697, 724
MvaI	CCWGG	3 cut(s)	91, 187, 863
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	208, 509, 896
NciI	CCSGG	3 cut(s)	101, 102, 199
NdeII	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
NlaIII	CATG	2 cut(s)	373, 821
NlaIV	GGNNCC	3 cut(s)	264, 381, 642
NmuCI	GTSAC	2 cut(s)	268, 284
NspI	RCATGY	1 cut(s)	821
NspV	TTCGAA	2 cut(s)	593, 728
PaeI	GCATGC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	1 cut(s)	725
PctI	GAATGC	2 cut(s)	697, 724
PfeI	GAWTC	8 cut(s)	113, 253, 406, 433, 446, 580, 674, 712
PkrI	GCNGC	5 cut(s)	174, 502, 571, 645, 823
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp124BI	GAGCTC	2 cut(s)	141, 305
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	3 cut(s)	89, 185, 861
PspGI	CCWGG	3 cut(s)	89, 185, 861
PspN4I	GGNNCC	3 cut(s)	264, 381, 642
PspPI	GGNCC	3 cut(s)	98, 183, 888
PstI	CTGCAG	2 cut(s)	60, 673
PsuI	RGATCY	2 cut(s)	86, 262
RsaI	GTAC	4 cut(s)	167, 416, 481, 860
RsaNI	GTAC	4 cut(s)	166, 415, 480, 859
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	2 cut(s)	141, 305
SaqAI	TTAA	3 cut(s)	26, 609, 964
SatI	GCNGC	5 cut(s)	173, 501, 570, 644, 822
Sau3AI	GATC	6 cut(s)	86, 262, 295, 557, 870, 912
Sau96I	GGNCC	3 cut(s)	98, 183, 888
ScaI	AGTACT	2 cut(s)	167, 416
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	6 cut(s)	91, 101, 102, 187, 199, 863
SduI	GDGCHC	2 cut(s)	141, 305
SexAI	ACCWGGT	1 cut(s)	861
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	2 cut(s)	56, 669
SfuI	TTCGAA	2 cut(s)	593, 728
SinI	GGWCC	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	4 cut(s)	5, 23, 217, 385
SsiI	CCGC	4 cut(s)	226, 500, 527, 644
SstI	GAGCTC	2 cut(s)	141, 305
StyD4I	CCNGG	6 cut(s)	89, 99, 100, 185, 197, 861
TaaI	ACNGT	2 cut(s)	121, 484
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	6 cut(s)	116, 560, 593, 719, 728, 848
TasI	AATT	4 cut(s)	5, 23, 217, 385
TatI	WGTACW	3 cut(s)	165, 414, 479
TauI	GCSGC	2 cut(s)	503, 646
TfiI	GAWTC	8 cut(s)	113, 253, 406, 433, 446, 580, 674, 712
Tru1I	TTAA	3 cut(s)	26, 609, 964
Tru9I	TTAA	3 cut(s)	26, 609, 964
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	268, 284
TseI	GCWGC	3 cut(s)	172, 569, 821
Tsp45I	GTSAC	2 cut(s)	268, 284
TspDTI	ATGAA	8 cut(s)	17, 54, 230, 326, 377, 530, 921, 936
TspGWI	ACGGA	3 cut(s)	149, 275, 426
TspMI	CCCGGG	1 cut(s)	100
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	2 cut(s)	5, 217
XceI	RCATGY	1 cut(s)	821
XmaI	CCCGGG	1 cut(s)	100
ZrmI	AGTACT	2 cut(s)	167, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.