Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

65611905 .. 65612507

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG461200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAAATGGTGGCGGAGTTTGTCAGTGGAAGTGTTGGGACTGGATCGAATAAGGCTGCTTATGAGATTCGGCTTCTTTCGAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGGAGACTCAAGAGAATGCAGTTGCAAGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTAGATGTTCTGAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGATACATTGTTTTATCTTGCTTCGATTGAGGAGTACCTGGTATTGATCGGAGAAAACCCGAGGGCCATACCGGCTTTGAGGGAGCTGATCAAGAATGAAATCTGTTCATCTTCCGGCCACGACGACCACGCTCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

150

Amino Acids

16.1

Weight (kDa)

5.52

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	33 - 69	1.5e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	2 cut(s)	14, 131
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	142, 199, 239
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	119, 145, 227, 397
AluI	AGCT	4 cut(s)	119, 145, 227, 397
Alw26I	GTCTC	2 cut(s)	161, 287
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	2 cut(s)	375, 427
ApeKI	GCWGC	2 cut(s)	56, 308
AspS9I	GGNCC	1 cut(s)	375
AsuII	TTCGAA	2 cut(s)	80, 215
AvaI	CYCGRG	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	43, 295
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	161, 287
BfmI	CTRYAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	57, 131, 309
BlsI	GCNGC	3 cut(s)	58, 132, 310
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	2 cut(s)	80, 215
BpuEI	CTTGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	43, 295
BshFI	GGCC	2 cut(s)	377, 429
BshNI	GGYRCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	383, 426
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	161, 287
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	2 cut(s)	184, 211
BsnI	GGCC	2 cut(s)	377, 429
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	2 cut(s)	80, 215
Bsp143I	GATC	3 cut(s)	44, 357, 399
BspACI	CCGC	2 cut(s)	14, 131
BspANI	GGCC	2 cut(s)	377, 429
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	2 cut(s)	80, 215
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	3 cut(s)	44, 357, 399
Bst2UI	CCWGG	1 cut(s)	350
BstBI	TTCGAA	2 cut(s)	80, 215
BstC8I	GCNNGC	3 cut(s)	298, 302, 306
BstDEI	CTNAG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	47, 360, 402
BstMAI	GTCTC	2 cut(s)	161, 287
BstMBI	GATC	3 cut(s)	44, 357, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	43, 295
BsuRI	GGCC	2 cut(s)	377, 429
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	298, 302, 306
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	375
CsiI	ACCWGGT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	46, 359, 401
DpnII	GATC	3 cut(s)	44, 357, 399
EaeI	YGGCCR	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	308
FaiI	YATR	3 cut(s)	63, 306, 380
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	57, 131, 309
Fsp4HI	GCNGC	3 cut(s)	57, 131, 309
GluI	GCNGC	3 cut(s)	57, 131, 309
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	377, 429
HapII	CCGG	2 cut(s)	383, 426
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	4 cut(s)	67, 161, 169, 199
HpaII	CCGG	2 cut(s)	383, 426
Hpy188I	TCNGA	3 cut(s)	166, 273, 362
Hpy188III	TCNNGA	3 cut(s)	173, 403, 446
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	158, 182, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	44, 357, 399
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	8 cut(s)	27, 105, 314, 335, 362, 396, 431, 439
Lsp1109I	GCAGC	2 cut(s)	43, 295
MabI	ACCWGGT	1 cut(s)	348
MalI	GATC	3 cut(s)	46, 359, 401
MboI	GATC	3 cut(s)	44, 357, 399
MboII	GAAGA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	271, 286, 334, 366, 384
MseI	TTAA	2 cut(s)	96, 451
MspI	CCGG	2 cut(s)	383, 426
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	184, 211
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	3 cut(s)	44, 357, 399
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	2 cut(s)	80, 215
PaeI	GCATGC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	2 cut(s)	184, 211
PfeI	GAWTC	3 cut(s)	67, 161, 199
PkrI	GCNGC	3 cut(s)	58, 132, 310
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	375
PstI	CTGCAG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	96, 451
SatI	GCNGC	3 cut(s)	57, 131, 309
Sau3AI	GATC	3 cut(s)	44, 357, 399
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	7 cut(s)	104, 121, 147, 194, 229, 351, 399
SexAI	ACCWGGT	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	2 cut(s)	80, 215
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SphI	GCATGC	1 cut(s)	308
SsiI	CCGC	2 cut(s)	14, 131
StyD4I	CCNGG	1 cut(s)	348
TaqI	TCGA	5 cut(s)	47, 80, 206, 215, 335
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	67, 161, 199
Tru1I	TTAA	2 cut(s)	96, 451
Tru9I	TTAA	2 cut(s)	96, 451
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	56, 308
TspDTI	ATGAA	3 cut(s)	17, 408, 423
TspRI	CASTG	1 cut(s)	31
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.