Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Forward (+)

17873185 .. 17874617

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG189400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGATATTTCATTCGGGTTTTTTTGGAAGAGATCCAGGCTGGGCCTCCAGGTCTTTCAGATTCGACCGTTTTGAGCTTCTCGGAGGTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAATCAGTTTTGGGTCTTGAATCTGACCAATCCGGTGATGATCGGGATGGGTCACAGCTATGATCAGAGCTCCATTACGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGGAAACAGGGGAGAAAACGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATCGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCACATTTGTTGAAGCTGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTTGAAGCATTCAAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTCTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCACATTGGGGAAGAAAACCCCCAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

293

Amino Acids

32.34

Weight (kDa)

9.02

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	69 - 126	1.2e-09	U-box domain
Arm	PF00514	187 - 223	4.6e-08	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	328, 589
AccBSI	CCGCTC	1 cut(s)	175
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	2 cut(s)	175, 449
AclWI	GGATC	2 cut(s)	28, 514
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	116, 133, 365
AfiI	CCNNNNNNNGG	3 cut(s)	153, 299, 405
AgsI	TTSAA	8 cut(s)	202, 346, 604, 661, 670, 678, 701, 786
AjnI	CCWGG	2 cut(s)	36, 49
AluBI	AGCT	9 cut(s)	78, 240, 252, 275, 444, 461, 581, 607, 689
AluI	AGCT	9 cut(s)	78, 240, 252, 275, 444, 461, 581, 607, 689
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	2 cut(s)	28, 514
Ama87I	CYCGRG	1 cut(s)	135
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	2 cut(s)	44, 868
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	44, 88
AsuC2I	CCSGG	3 cut(s)	136, 137, 148
AsuHPI	GGTGA	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	88
BanI	GGYRCC	2 cut(s)	328, 589
BanII	GRGCYC	1 cut(s)	254
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbsI	GAAGAC	2 cut(s)	132, 635
Bbv12I	GWGCWC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	453
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	38, 51
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	136, 137, 148
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	2 cut(s)	794, 872
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	428
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
BmcAI	AGTACT	2 cut(s)	116, 365
Bme1390I	CCNGG	5 cut(s)	38, 51, 136, 137, 148
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	44, 88
BmiI	GGNNCC	2 cut(s)	330, 591
BmrFI	CCNGG	5 cut(s)	38, 51, 136, 137, 148
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	132, 635
BpmI	CTGGAG	2 cut(s)	33, 603
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	3 cut(s)	136, 137, 148
BsaBI	GATNNNNATC	1 cut(s)	811
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	3 cut(s)	214, 292, 398
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 299, 405
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	811
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	38, 51
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	162, 234, 733
BseJI	GATNNNNATC	1 cut(s)	811
BseLI	CCNNNNNNNGG	3 cut(s)	153, 299, 405
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	46, 870
BshNI	GGYRCC	2 cut(s)	328, 589
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	5 cut(s)	136, 148, 215, 293, 399
BslFI	GGGAC	2 cut(s)	152, 814
BslI	CCNNNNNNNGG	3 cut(s)	153, 299, 405
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	152, 814
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	46, 870
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	33, 222, 244, 506
BspACI	CCGC	2 cut(s)	175, 449
BspANI	GGCC	2 cut(s)	46, 870
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	330, 591
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	28, 514
BspT104I	TTCGAA	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	328, 589
BspTNI	GGTCTC	1 cut(s)	749
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	33, 222, 244, 506
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	38, 51
Bst4CI	ACNGT	2 cut(s)	70, 131
Bst6I	CTCTTC	2 cut(s)	24, 341
BstACI	GRCGYC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	626
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	162, 234, 733
BstKTI	GATC	4 cut(s)	36, 225, 247, 509
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	4 cut(s)	33, 222, 244, 506
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 458
BstNI	CCWGG	2 cut(s)	38, 51
BstSCI	CCNGG	5 cut(s)	36, 49, 134, 135, 146
BstSFI	CTRYAG	1 cut(s)	618
BstV2I	GAAGAC	2 cut(s)	132, 635
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	46, 870
BtsCI	GGATG	3 cut(s)	162, 234, 733
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	44, 88
Cfr9I	CCCGGG	1 cut(s)	135
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	115, 132, 364
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	1 cut(s)	319
CviQI	GTAC	3 cut(s)	115, 132, 364
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	4 cut(s)	35, 224, 246, 508
DpnII	GATC	4 cut(s)	33, 222, 244, 506
Eam1104I	CTCTTC	2 cut(s)	24, 341
EarI	CTCTTC	2 cut(s)	24, 341
Ecl136II	GAGCTC	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	36, 49
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	1 cut(s)	322
FaiI	YATR	4 cut(s)	154, 243, 320, 464
FaqI	GGGAC	2 cut(s)	152, 814
FatI	CATG	1 cut(s)	318
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	3 cut(s)	169, 241, 740
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	794, 872
GluI	GCNGC	1 cut(s)	450
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	2 cut(s)	33, 603
HaeIII	GGCC	2 cut(s)	46, 870
HapII	CCGG	5 cut(s)	136, 148, 215, 293, 399
HgaI	GACGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	791
HindII	GTYRAC	1 cut(s)	791
HpaII	CCGG	5 cut(s)	136, 148, 215, 293, 399
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	791
Hpy188I	TCNGA	8 cut(s)	61, 85, 172, 207, 249, 272, 408, 735
Hpy188III	TCNNGA	6 cut(s)	103, 199, 226, 293, 413, 635
Hpy8I	GTNNAC	1 cut(s)	791
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	100, 730, 748
HpyCH4III	ACNGT	2 cut(s)	70, 131
HpyCH4V	TGCA	5 cut(s)	369, 431, 437, 620, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 458
HpyF3I	CTNAG	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	33, 222, 244, 506
LmnI	GCTCC	3 cut(s)	172, 257, 458
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	794, 872
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	35, 224, 246, 508
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	4 cut(s)	33, 222, 244, 506
MboII	GAAGA	7 cut(s)	41, 137, 325, 358, 640, 765, 837
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	2 cut(s)	166, 334
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	57, 79, 316, 342, 417, 448, 733
MroI	TCCGGA	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	240, 323
MspI	CCGG	5 cut(s)	136, 148, 215, 293, 399
MspR9I	CCNGG	5 cut(s)	38, 51, 136, 137, 148
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	38, 51
MwoI	GCNNNNNNNGC	2 cut(s)	157, 458
NciI	CCSGG	3 cut(s)	136, 137, 148
NdeII	GATC	4 cut(s)	33, 222, 244, 506
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	330, 591
NmuCI	GTSAC	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	870
PctI	GAATGC	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	36, 49
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	36, 49
PspN4I	GGNNCC	2 cut(s)	330, 591
PspPI	GGNCC	2 cut(s)	44, 88
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	3 cut(s)	116, 133, 365
RsaNI	GTAC	3 cut(s)	115, 132, 364
RseI	CAYNNNNRTG	2 cut(s)	240, 323
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	4 cut(s)	33, 222, 244, 506
Sau96I	GGNCC	2 cut(s)	44, 88
ScaI	AGTACT	2 cut(s)	116, 365
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	5 cut(s)	38, 51, 136, 137, 148
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	626
SinI	GGWCC	1 cut(s)	88
SmaI	CCCGGG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	240, 323
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	2 cut(s)	166, 334
SseBI	AGGCCT	1 cut(s)	870
SsiI	CCGC	2 cut(s)	175, 449
SspMI	CTAG	2 cut(s)	794, 872
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	870
StyD4I	CCNGG	5 cut(s)	36, 49, 134, 135, 146
TaaI	ACNGT	2 cut(s)	70, 131
TaqI	TCGA	3 cut(s)	65, 509, 626
TasI	AATT	2 cut(s)	166, 334
TatI	WGTACW	2 cut(s)	114, 363
TauI	GCSGC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	179, 479
TspGWI	ACGGA	1 cut(s)	375
TspMI	CCCGGG	1 cut(s)	135
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	166
XmaI	CCCGGG	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	794, 872
ZrmI	AGTACT	2 cut(s)	116, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.