Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

36952932 .. 36957533

Gene Structure 4602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGATCCAGGCTGGGCCTCCAGGTCTTTCAGATTCGACCGTTTTGAGCTTCTTGGAGGTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTGCGAATCAGTTTTGGGTCTTGAATCTAACCGATCCGGTGACGATCGGGATGGGTCACAGCTACGATCGGAGCTCCATTACGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGGAAACAGGGGAGAAAACGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGAATCCGGTTGTCGGAATCACGACATTGGGAGGAGTGCAGTTGCAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGTGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATCGAATAAGGTTGCTTTTGAGATTCGGCTTCTTTCCAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCGGTTGGCTTCTGCAGATTCGAAGACTCAAGAGAATGTAGTTGCAGGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAAAGAAGGAAATGGGTTTTGATTTTTCTTTAGTTTCAAGTCAACTAGGTGGGACGAGATTGGAATCAAATTGGGGAAGAAAACCCCCAGAAAAGCACAGGAGAAAAGAAGCCCAGAAAGGCCTAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

284

Amino Acids

31.21

Weight (kDa)

9.03

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	60 - 117	1.2e-10	U-box domain
Arm	PF00514	178 - 214	7.4e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AccB1I	GGYRCC	2 cut(s)	301, 562
AccBSI	CCGCTC	1 cut(s)	148
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	4 cut(s)	148, 422, 566, 580
AclWI	GGATC	2 cut(s)	179, 487
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	89, 106, 338
AfiI	CCNNNNNNNGG	3 cut(s)	126, 272, 378
AgsI	TTSAA	6 cut(s)	175, 319, 577, 634, 674, 759
AjnI	CCWGG	2 cut(s)	9, 22
AluBI	AGCT	8 cut(s)	51, 213, 225, 248, 417, 434, 554, 662
AluI	AGCT	8 cut(s)	51, 213, 225, 248, 417, 434, 554, 662
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	179, 487
Ama87I	CYCGRG	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	2 cut(s)	17, 841
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	17, 61
AsuC2I	CCSGG	3 cut(s)	109, 110, 121
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	2 cut(s)	599, 650
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	301, 562
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BbsI	GAAGAC	2 cut(s)	105, 608
Bbv12I	GWGCWC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	11, 24
BcnI	CCSGG	3 cut(s)	109, 110, 121
BcoDI	GTCTC	1 cut(s)	722
BfaI	CTAG	2 cut(s)	767, 845
BfmI	CTRYAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	423, 566
BlsI	GCNGC	2 cut(s)	424, 567
BmcAI	AGTACT	2 cut(s)	89, 338
Bme1390I	CCNGG	5 cut(s)	11, 24, 109, 110, 121
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	17, 61
BmiI	GGNNCC	2 cut(s)	303, 564
BmrFI	CCNGG	5 cut(s)	11, 24, 109, 110, 121
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	105, 608
BpmI	CTGGAG	2 cut(s)	6, 576
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	599, 650
BpuEI	CTTGAG	1 cut(s)	591
BpuMI	CCSGG	3 cut(s)	109, 110, 121
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	3 cut(s)	187, 265, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 272, 378
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	11, 24
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	3 cut(s)	135, 207, 706
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	126, 272, 378
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	3 cut(s)	42, 198, 220
BshFI	GGCC	2 cut(s)	19, 843
BshNI	GGYRCC	2 cut(s)	301, 562
BsiEI	CGRYCG	3 cut(s)	42, 198, 220
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	5 cut(s)	109, 121, 188, 266, 372
BslFI	GGGAC	2 cut(s)	125, 787
BslI	CCNNNNNNNGG	3 cut(s)	126, 272, 378
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	125, 787
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	19, 843
Bso31I	GGTCTC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	2 cut(s)	599, 650
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	6, 184, 195, 217, 479
BspACI	CCGC	4 cut(s)	148, 422, 566, 580
BspANI	GGCC	2 cut(s)	19, 843
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	303, 564
BspMAI	CTGCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	179, 487
BspT104I	TTCGAA	2 cut(s)	599, 650
BspT107I	GGYRCC	2 cut(s)	301, 562
BspTNI	GGTCTC	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	5 cut(s)	6, 184, 195, 217, 479
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	11, 24
Bst4CI	ACNGT	2 cut(s)	43, 104
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	2 cut(s)	599, 650
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	135, 207, 706
BstKTI	GATC	5 cut(s)	9, 187, 198, 220, 482
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	5 cut(s)	6, 184, 195, 217, 479
BstMCI	CGRYCG	3 cut(s)	42, 198, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 431
BstNI	CCWGG	2 cut(s)	11, 24
BstSCI	CCNGG	5 cut(s)	9, 22, 107, 108, 119
BstSFI	CTRYAG	1 cut(s)	591
BstV2I	GAAGAC	2 cut(s)	105, 608
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	19, 843
BtsCI	GGATG	3 cut(s)	135, 207, 706
BtsIMutI	CAGTG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	17, 61
Cfr9I	CCCGGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	88, 105, 337
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	3 cut(s)	88, 105, 337
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	5 cut(s)	8, 186, 197, 219, 481
DpnII	GATC	5 cut(s)	6, 184, 195, 217, 479
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	9, 22
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	127, 293, 437
FaqI	GGGAC	2 cut(s)	125, 787
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	423, 566
FokI	GGATG	3 cut(s)	142, 214, 713
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	423, 566
FspBI	CTAG	2 cut(s)	767, 845
GluI	GCNGC	2 cut(s)	423, 566
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	6, 576
HaeIII	GGCC	2 cut(s)	19, 843
HapII	CCGG	5 cut(s)	109, 121, 188, 266, 372
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	764
HindII	GTYRAC	1 cut(s)	764
HpaII	CCGG	5 cut(s)	109, 121, 188, 266, 372
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	6 cut(s)	34, 145, 222, 245, 381, 708
Hpy188III	TCNNGA	6 cut(s)	76, 172, 199, 266, 386, 608
Hpy8I	GTNNAC	1 cut(s)	764
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	73, 703, 721
HpyCH4III	ACNGT	2 cut(s)	43, 104
HpyCH4V	TGCA	5 cut(s)	342, 404, 410, 593, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 431
HpyF3I	CTNAG	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	6, 184, 195, 217, 479
LmnI	GCTCC	4 cut(s)	145, 222, 230, 431
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	767, 845
MaeIII	GTNAC	2 cut(s)	190, 206
MalI	GATC	5 cut(s)	8, 186, 197, 219, 481
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	5 cut(s)	6, 184, 195, 217, 479
MboII	GAAGA	5 cut(s)	110, 298, 331, 613, 810
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	139, 307, 790
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	30, 52, 289, 315, 390, 421, 706
MroI	TCCGGA	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	5 cut(s)	109, 121, 188, 266, 372
MspR9I	CCNGG	5 cut(s)	11, 24, 109, 110, 121
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	11, 24
MwoI	GCNNNNNNNGC	2 cut(s)	130, 431
NciI	CCSGG	3 cut(s)	109, 110, 121
NdeII	GATC	5 cut(s)	6, 184, 195, 217, 479
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	303, 564
NmuCI	GTSAC	2 cut(s)	190, 206
NspV	TTCGAA	2 cut(s)	599, 650
PceI	AGGCCT	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	1 cut(s)	647
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	424, 567
Ple19I	CGATCG	2 cut(s)	198, 220
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	9, 22
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	9, 22
PspN4I	GGNNCC	2 cut(s)	303, 564
PspPI	GGNCC	2 cut(s)	17, 61
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	6
PvuI	CGATCG	2 cut(s)	198, 220
RsaI	GTAC	3 cut(s)	89, 106, 338
RsaNI	GTAC	3 cut(s)	88, 105, 337
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	2 cut(s)	423, 566
Sau3AI	GATC	5 cut(s)	6, 184, 195, 217, 479
Sau96I	GGNCC	2 cut(s)	17, 61
ScaI	AGTACT	2 cut(s)	89, 338
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	5 cut(s)	11, 24, 109, 110, 121
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	2 cut(s)	599, 650
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	139, 307, 790
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	4 cut(s)	148, 422, 566, 580
SspMI	CTAG	2 cut(s)	767, 845
SstI	GAGCTC	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	5 cut(s)	9, 22, 107, 108, 119
TaaI	ACNGT	2 cut(s)	43, 104
TaqI	TCGA	5 cut(s)	38, 482, 599, 641, 650
TasI	AATT	3 cut(s)	139, 307, 790
TatI	WGTACW	2 cut(s)	87, 336
TauI	GCSGC	2 cut(s)	425, 568
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	190, 206
Tsp45I	GTSAC	2 cut(s)	190, 206
TspDTI	ATGAA	2 cut(s)	152, 452
TspGWI	ACGGA	1 cut(s)	348
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	139
XmaI	CCCGGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	767, 845
ZrmI	AGTACT	2 cut(s)	89, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.