Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016991

Physical Location & Seq

Genomic Coordinates Reverse (-)

52189179 .. 52189937

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCTGGTGAATTTGGAGCGGGTTGCGAACCAGTTTCGGGTCTTGATTCAGACTAATCGGGAGACGATTGGGACGGGTCACAGCTACGATCGGAGATCCATTATGAAGTGGTTTAGAGCTGGAAAGCTGATATGTCCGAAAACAGGGGAGAAAATGAAGAACATGGAGGTGGTGCCTAATTTGGCATTGAAGAGGTTGATTCAACAATACTGCAATGAGAATGGGATTCCGTTTGGCGATTCCGGTCGTCGAAATCACGACATTAGGAGGAGTACAGTTACAGGTAGCTTGGCGGCTGAGGGAGCTATGAAAATGGTGGCGGAGTTTGTCAGTGGAAGTGTTGGGATTGGATCGAATAAGGGTGCTTATGAGATTCGGCTTCTTTCTAAAACGAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCAAATTTGGAGACTCAAGAGAATGCAGTTGCAAGGTTGTTGAATCTGTCGAAGCATTCGAAAGGGAAAGCTGTGATTGTTGAAAATGGGGGTGTGGATTTGGTTGTAGATGTTCTGAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGATACATTGTTTTATCTTGCTTCGATTGAGGAGTACCGGGTATTGATCGGAGAAAACCCGAGGGCCATATCGGCTTTGAGGGAGCTGATCAAGAATGAAATCTGTTCATCTTCCGGCCACGACGACCACGCTCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

8.94

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	25 - 74	9.3e-07	U-box domain
Arm	PF00514	135 - 171	1.3e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016991)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0106211 RchiOBHm_Chr5g0043341
rosa_laevigata	RLG00000008619 RLG00000029724
rosa_rugosa	Rorug05G0335000
rosa_samantha	Rh1DG445700 Rh2AG345900 Rh2CG189400 Rh5AG275600 Rh6DG424700 Rh7BG083000 Rh7BG447300 Rh7CG493700 Rh7DG461200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	172, 433
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	4 cut(s)	19, 293, 320, 437
AclWI	GGATC	2 cut(s)	90, 358
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	10, 466
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	2 cut(s)	274, 653
AfiI	CCNNNNNNNGG	3 cut(s)	37, 143, 751
AgsI	TTSAA	5 cut(s)	190, 203, 448, 505, 545
AluBI	AGCT	9 cut(s)	84, 119, 127, 288, 305, 425, 451, 533, 703
AluI	AGCT	9 cut(s)	84, 119, 127, 288, 305, 425, 451, 533, 703
Alw26I	GTCTC	3 cut(s)	56, 467, 593
AlwI	GGATC	2 cut(s)	90, 358
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	2 cut(s)	681, 733
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	10, 466
AspS9I	GGNCC	1 cut(s)	681
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	676
BanI	GGYRCC	2 cut(s)	172, 433
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	3 cut(s)	56, 467, 593
BglI	GCCNNNNNGGC	1 cut(s)	689
BisI	GCNGC	3 cut(s)	294, 437, 615
BlsI	GCNGC	3 cut(s)	295, 438, 616
Bme1390I	CCNGG	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	2 cut(s)	174, 435
BmrFI	CCNGG	1 cut(s)	656
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	297, 750
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	677
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 143, 751
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	677
BseLI	CCNNNNNNNGG	3 cut(s)	37, 143, 751
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	283, 662
BseXI	GCAGC	1 cut(s)	601
Bsh1285I	CGRYCG	2 cut(s)	91, 247
BshFI	GGCC	2 cut(s)	683, 735
BshNI	GGYRCC	2 cut(s)	172, 433
BsiEI	CGRYCG	2 cut(s)	91, 247
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	3 cut(s)	243, 655, 732
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	37, 143, 751
BsmAI	GTCTC	3 cut(s)	56, 467, 593
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	2 cut(s)	490, 517
BsnI	GGCC	2 cut(s)	683, 735
Bso31I	GGTCTC	1 cut(s)	593
BsoBI	CYCGRG	1 cut(s)	676
Bsp119I	TTCGAA	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	88, 95, 350, 663, 705
BspACI	CCGC	4 cut(s)	19, 293, 320, 437
BspANI	GGCC	2 cut(s)	683, 735
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	174, 435
BspPI	GGATC	2 cut(s)	90, 358
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	2 cut(s)	172, 433
BspTNI	GGTCTC	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	5 cut(s)	88, 95, 350, 663, 705
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	604, 608, 612
BstDEI	CTNAG	2 cut(s)	297, 750
BstKTI	GATC	5 cut(s)	91, 98, 353, 666, 708
BstMAI	GTCTC	3 cut(s)	56, 467, 593
BstMBI	GATC	5 cut(s)	88, 95, 350, 663, 705
BstMCI	CGRYCG	2 cut(s)	91, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 689
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	601
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	683, 735
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	604, 608, 612
Cfr13I	GGNCC	1 cut(s)	681
Csp6I	GTAC	2 cut(s)	273, 652
CviAII	CATG	2 cut(s)	163, 611
CviQI	GTAC	2 cut(s)	273, 652
DdeI	CTNAG	2 cut(s)	297, 750
DpnI	GATC	5 cut(s)	90, 97, 352, 665, 707
DpnII	GATC	5 cut(s)	88, 95, 350, 663, 705
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	166, 614
FaiI	YATR	7 cut(s)	104, 133, 164, 308, 369, 612, 686
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	162, 610
FauI	CCCGC	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	294, 437, 615
Fsp4HI	GCNGC	3 cut(s)	294, 437, 615
GluI	GCNGC	3 cut(s)	294, 437, 615
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	683, 735
HapII	CCGG	3 cut(s)	243, 655, 732
Hin1II	CATG	2 cut(s)	166, 614
HinfI	GANTC	7 cut(s)	46, 199, 226, 239, 373, 475, 505
HpaII	CCGG	3 cut(s)	243, 655, 732
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	5 cut(s)	51, 93, 138, 579, 668
Hpy188III	TCNNGA	6 cut(s)	43, 59, 257, 479, 709, 752
Hpy99I	CGWCG	2 cut(s)	252, 743
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	213, 464, 488, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 689
HpyF3I	CTNAG	2 cut(s)	297, 750
Hsp92II	CATG	2 cut(s)	166, 614
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	88, 95, 350, 663, 705
LmnI	GCTCC	3 cut(s)	16, 302, 700
Lsp1109I	GCAGC	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	77, 277
MalI	GATC	5 cut(s)	90, 97, 352, 665, 707
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	5 cut(s)	88, 95, 350, 663, 705
MboII	GAAGA	3 cut(s)	169, 202, 720
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	3 cut(s)	10, 178, 466
MlyI	GAGTC	1 cut(s)	469
MnlI	CCTC	9 cut(s)	160, 186, 261, 292, 577, 592, 640, 672, 690
MseI	TTAA	2 cut(s)	402, 757
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	3 cut(s)	243, 655, 732
MspR9I	CCNGG	1 cut(s)	656
Mva1269I	GAATGC	2 cut(s)	490, 517
MwoI	GCNNNNNNNGC	2 cut(s)	302, 689
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	5 cut(s)	88, 95, 350, 663, 705
NlaIII	CATG	2 cut(s)	166, 614
NlaIV	GGNNCC	2 cut(s)	174, 435
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	614
NspV	TTCGAA	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PctI	GAATGC	2 cut(s)	490, 517
PfeI	GAWTC	6 cut(s)	46, 199, 226, 239, 373, 505
PkrI	GCNGC	3 cut(s)	295, 438, 616
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	174, 435
PspPI	GGNCC	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	95
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	274, 653
RsaNI	GTAC	2 cut(s)	273, 652
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	402, 757
SatI	GCNGC	3 cut(s)	294, 437, 615
Sau3AI	GATC	5 cut(s)	88, 95, 350, 663, 705
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	656
SfuI	TTCGAA	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	3 cut(s)	10, 178, 466
SsiI	CCGC	4 cut(s)	19, 293, 320, 437
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	5 cut(s)	250, 353, 512, 521, 641
TasI	AATT	3 cut(s)	10, 178, 466
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	2 cut(s)	296, 439
TfiI	GAWTC	6 cut(s)	46, 199, 226, 239, 373, 505
Tru1I	TTAA	2 cut(s)	402, 757
Tru9I	TTAA	2 cut(s)	402, 757
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	119, 170, 323, 714, 729
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	10, 466
XceI	RCATGY	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.