Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

26803743 .. 26809199

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCAAAGAGCTGGATCCGCCATGGCTACAACAAAGTAGCTCGAGCTGTAGGCAAAGCGGACCCAAAGAAGCAGCAAGACATTCCAATATTGAAAGGACACCCTGCTGCACAAGTACATGCAGAAGAGGCTCTTGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCATTACAGAGGATAAAAGCAGAGGATGATTCAACCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCGTGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCTGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCCCAAAGGATGGTCGGGAGTACAAGCAATCGCCTGCAGACCGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCTGACAGGACTCTATCGGGATCAGTCCACAGAGGAGCGATTGCAGTCATTAACAGAGGACCAGAAGGGCTATATAGATGCAACATTATAAAGAATTGCACTGCCACGTGCCCCAAAAGCCTCAATCCTGCCGATGCCATACAGAAAATGAAAACCAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCGGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

303

Amino Acids

34.16

Weight (kDa)

9.07

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	61 - 165	7.1e-33	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	201 - 277	8.8e-08	4Fe-4S dicluster domain
Fer4_17	PF13534	203 - 279	1.2e-08	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
Acc36I	ACCTGC	1 cut(s)	507
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	613
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	4 cut(s)	19, 59, 443, 683
AclWI	GGATC	3 cut(s)	10, 23, 739
AcuI	CTGAAG	1 cut(s)	548
AcvI	CACGTG	1 cut(s)	819
AfaI	GTAC	3 cut(s)	117, 506, 563
AfiI	CCNNNNNNNGG	2 cut(s)	551, 654
AgsI	TTSAA	6 cut(s)	94, 184, 312, 423, 518, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	860, 892
AluBI	AGCT	5 cut(s)	12, 41, 47, 321, 592
AluI	AGCT	5 cut(s)	12, 41, 47, 321, 592
Alw26I	GTCTC	2 cut(s)	131, 401
AlwI	GGATC	3 cut(s)	10, 23, 739
Ama87I	CYCGRG	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	73, 107, 445
AspS9I	GGNCC	4 cut(s)	61, 263, 677, 770
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	4 cut(s)	61, 263, 677, 770
BaeGI	GKGCMC	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	85, 94, 432
BccI	CCATC	5 cut(s)	189, 216, 368, 545, 699
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	131, 401
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	4 cut(s)	48, 322, 500, 576
BfuAI	ACCTGC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	4 cut(s)	74, 108, 446, 684
BlsI	GCNGC	4 cut(s)	75, 109, 447, 685
Bme18I	GGWCC	4 cut(s)	61, 263, 677, 770
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	4 cut(s)	61, 263, 677, 770
BmiI	GGNNCC	4 cut(s)	17, 63, 200, 379
BmsI	GCATC	4 cut(s)	268, 400, 779, 835
BpiI	GAAGAC	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	155, 215
Bsa29I	ATCGAT	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	819
BsaBI	GATNNNNATC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	22, 387, 521, 673
BsaWI	WCCGGW	2 cut(s)	582, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 654
Bse1I	ACTGG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	4 cut(s)	22, 387, 521, 673
BseGI	GGATG	4 cut(s)	208, 283, 310, 556
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	551, 654
BseMII	CTCAG	3 cut(s)	308, 412, 896
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	680, 759
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	3 cut(s)	85, 94, 432
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	583, 662
BslI	CCNNNNNNNGG	2 cut(s)	551, 654
BsmAI	GTCTC	2 cut(s)	131, 401
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	203, 824
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	5 cut(s)	15, 462, 469, 481, 731
Bsp19I	CCATGG	2 cut(s)	22, 521
BspACI	CCGC	4 cut(s)	19, 59, 443, 683
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	3 cut(s)	309, 411, 895
BspDI	ATCGAT	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	17, 63, 200, 379
BspMAI	CTGCAG	2 cut(s)	504, 580
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	3 cut(s)	10, 23, 739
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	4 cut(s)	22, 387, 521, 673
BssMI	GATC	5 cut(s)	15, 462, 469, 481, 731
BssNAI	GTATAC	1 cut(s)	614
BssT1I	CCWWGG	3 cut(s)	22, 521, 673
Bst1107I	GTATAC	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	151, 260, 388
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	317, 398, 882
BstDSI	CCRYGG	3 cut(s)	22, 387, 521
BstF5I	GGATG	4 cut(s)	208, 283, 310, 556
BstKTI	GATC	5 cut(s)	18, 465, 472, 484, 734
BstMAI	GTCTC	2 cut(s)	131, 401
BstMBI	GATC	5 cut(s)	15, 462, 469, 481, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 828
BstNSI	RCATGY	2 cut(s)	122, 910
BstSFI	CTRYAG	4 cut(s)	48, 322, 500, 576
BstSLI	GKGCMC	1 cut(s)	824
BstV1I	GCAGC	3 cut(s)	85, 94, 432
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	15, 469
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	15, 469
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	3 cut(s)	22, 387, 521
BtsCI	GGATG	4 cut(s)	208, 283, 310, 556
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	1 cut(s)	810
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	4 cut(s)	61, 263, 677, 770
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	116, 505, 562
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	3 cut(s)	116, 505, 562
DdeI	CTNAG	3 cut(s)	317, 398, 882
DpnI	GATC	5 cut(s)	17, 464, 471, 483, 733
DpnII	GATC	5 cut(s)	15, 462, 469, 481, 731
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	22, 521, 673
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	4 cut(s)	61, 263, 677, 770
Eco57I	CTGAAG	1 cut(s)	548
Eco72I	CACGTG	1 cut(s)	819
Eco88I	CYCGRG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	3 cut(s)	22, 521, 673
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	3 cut(s)	22, 521, 673
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 224, 256
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	74, 108, 446, 684
FokI	GGATG	4 cut(s)	195, 290, 317, 563
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	74, 108, 446, 684
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	4 cut(s)	74, 108, 446, 684
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	583, 662
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	3 cut(s)	308, 658, 721
HpaII	CCGG	2 cut(s)	583, 662
Hpy166II	GTNNAC	3 cut(s)	247, 614, 739
Hpy188I	TCNGA	3 cut(s)	155, 401, 715
Hpy188III	TCNNGA	7 cut(s)	134, 184, 212, 557, 662, 729, 901
Hpy8I	GTNNAC	3 cut(s)	247, 614, 739
HpyAV	CCTTC	3 cut(s)	335, 654, 770
HpyCH4III	ACNGT	3 cut(s)	151, 260, 388
HpyCH4IV	ACGT	1 cut(s)	818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 828
HpyF3I	CTNAG	3 cut(s)	317, 398, 882
HpySE526I	ACGT	1 cut(s)	818
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	15, 462, 469, 481, 731
LmnI	GCTCC	4 cut(s)	198, 696, 746, 903
Lsp1109I	GCAGC	3 cut(s)	85, 94, 432
LweI	GCATC	4 cut(s)	268, 400, 779, 835
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	818
MalI	GATC	5 cut(s)	17, 464, 471, 483, 733
MboI	GATC	5 cut(s)	15, 462, 469, 481, 731
MboII	GAAGA	3 cut(s)	137, 541, 598
MflI	RGATCY	2 cut(s)	15, 469
MhlI	GDGCHC	2 cut(s)	203, 824
MluCI	AATT	2 cut(s)	490, 805
MlyI	GAGTC	1 cut(s)	715
Mph1103I	ATGCAT	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	1 cut(s)	762
MspA1I	CMGCKG	2 cut(s)	445, 683
MspI	CCGG	2 cut(s)	583, 662
MwoI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 828
NcoI	CCATGG	2 cut(s)	22, 521
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	5 cut(s)	15, 462, 469, 481, 731
NlaIV	GGNNCC	4 cut(s)	17, 63, 200, 379
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	122, 910
PaeR7I	CTCGAG	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	308, 658
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	75, 109, 447, 685
PleI	GAGTC	1 cut(s)	715
PmaCI	CACGTG	1 cut(s)	819
PmlI	CACGTG	1 cut(s)	819
PpsI	GAGTC	1 cut(s)	715
Ppu21I	YACGTR	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	800
PspCI	CACGTG	1 cut(s)	819
PspN4I	GGNNCC	4 cut(s)	17, 63, 200, 379
PspPI	GGNCC	4 cut(s)	61, 263, 677, 770
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	504, 580
PsuI	RGATCY	2 cut(s)	15, 469
RsaI	GTAC	3 cut(s)	117, 506, 563
RsaNI	GTAC	3 cut(s)	116, 505, 562
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	4 cut(s)	74, 108, 446, 684
Sau3AI	GATC	5 cut(s)	15, 462, 469, 481, 731
Sau96I	GGNCC	4 cut(s)	61, 263, 677, 770
SchI	GAGTC	1 cut(s)	715
SduI	GDGCHC	2 cut(s)	203, 824
SfaNI	GCATC	4 cut(s)	268, 400, 779, 835
SfcI	CTRYAG	4 cut(s)	48, 322, 500, 576
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	4 cut(s)	61, 263, 677, 770
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	3 cut(s)	42, 134, 230
SmoI	CTYRAG	3 cut(s)	42, 134, 230
Sse9I	AATT	2 cut(s)	490, 805
SsiI	CCGC	4 cut(s)	19, 59, 443, 683
SspI	AATATT	2 cut(s)	90, 370
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	3 cut(s)	22, 521, 673
TaaI	ACNGT	3 cut(s)	151, 260, 388
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	2 cut(s)	43, 703
TasI	AATT	2 cut(s)	490, 805
TatI	WGTACW	3 cut(s)	115, 504, 561
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	308, 658
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	1 cut(s)	817
TseI	GCWGC	3 cut(s)	73, 107, 445
TspDTI	ATGAA	4 cut(s)	159, 380, 621, 875
TspRI	CASTG	1 cut(s)	817
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	4 cut(s)	61, 263, 677, 770
XceI	RCATGY	2 cut(s)	122, 910
XhoI	CTCGAG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	613
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.