RchiOBHm_Chr2g0128621

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004522
Physical Location & Seq
Reverse (-)
43909979 .. 43913461
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1500 bp
ATGCTGAGTGCAATATCAAAAGAAGAGTTCCTCTTCCTTGTTAAGAAGTATTATGATATTCTCACTGTTGCACTACTGTTTTCTATCGGAGTTGCATTTTTCGTCTCTAAATTAGCATGGAGAAAGGTCACAGGTTCCAGAGGTCACATCCCTGGCCGGTTGGGGTTACCCTTTATTGGTGAAACCATTTCTTTTATGTCAGCAACCAATAGCACAAGAGGATGCTATGATTTTATCAGATTCCGGCGAATATGGTATGGGAAGTGGTTCAAGACGAGAATTTTTGGCAAGATCCATGTGTTTGTTCCAAGTACAGAGGGTGCAAAAATGATATTTTCTAATGATTTTGCTAAGTTCAACAAAGGATATGTGAAATCAATGGCAGATTGTATTGGAGATAAAAGCTTGCTCTGTGTACCACATGAGAACCATAAAAGAATAAGGCGCTTATTATCAGATCCTTTCTCCATGAATTCTTTATCTTCGTTCATTGAGAAATTCGATAGAATGCTGTGTCAGAAGCTGAAGAAACTAGAACAAGGTGGGAAAAGCTTTTCGGTGCTTGACTTCAGTATGAGGATGACATTTGATGCGATGTGCTGCATGCTAATGAGTGTCATGGATGAGCCCTTGCTAAGGCAGCTTGAGAAAGACTGCACTGCAGTCTCGGATGGAATCTTATCTGTTCCTGTCATGATTCCAGGCACTAGATATTACAAAGGCATCAAGTGTACGCTAAGAGAATTGTTAACGCTGCAGGCACGCAGACGTCTCATGGAAACCTTTAAAGACATGATTGCCAGAAGAAGGAGTGGGAAGGAGTTGCCAGAACCAGAAGATTTCCTACAGTCCATGTTGCGAAGAGACTCATACCCTCCCAATGAAAAGCTGCAAGACTCAGAAATCATGGACAACCTAATGACACTTATAATTGCAGGGCAGACGACCACTTCAGCTGCAATGATGTGGAGTGTCAAGTTTCTGGATGAGAACCAACAAGTCCAAGACATTCTTAGGGAGGAACAATTGTCTATAGCCACATCCAAGCCCGAAGGAGCATCAATTACCCTTGAAGATATTAATAATATGTCCTACTGTTGGAAGGTTGTTAAAGAAACAGTAAGGATGTCAACTGTGGTTATGTGGTATCCTCGAGTTGCACTCAGTGACTGTTTTGAGATAAAGAAAGGGTGGCATGTGAACATTGACGCGACATGCATACACAACGACCCAGATTTGTACCCAGACCCTACTAAATTCAACCCTTCTAGATTTGATGAAATACAAAAGCCATATAGTTTCATACCATTTGGGTCAGGACCCAGGACATGTTTGGGAATCAATATGGCCAAGATGACAATGATGATCTTTCTTCACCGTCTCACTACTGCATACAGGTGGACAGTCGATGATCTTGATACCAGTCTAGAAAAGAAGGCCCATATTCCTAGACTAAGAAGTGGTTGTCCAATTACCTTGACGGCGCGGCCTTGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

499

Amino Acids

57.43

Weight (kDa)

9.22

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 55 - 474 3.2e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AatII GACGTC 1 cut(s) 772
AccII CGCG 2 cut(s) 1211, 1486
AciI CCGC 1 cut(s) 1486
AclWI GGATC 2 cut(s) 286, 452
AcoI YGGCCR 2 cut(s) 154, 1347
AcsI RAATTY 4 cut(s) 279, 472, 497, 1256
AcuI CTGAAG 3 cut(s) 545, 553, 936
AcyI GRCGYC 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 1166
AfaI GTAC 4 cut(s) 313, 417, 733, 1241
AfiI CCNNNNNNNGG 4 cut(s) 176, 636, 807, 1098
AflIII ACRYGT 1 cut(s) 1328
AgsI TTSAA 4 cut(s) 271, 358, 1073, 1261
AjnI CCWGG 3 cut(s) 151, 700, 1322
AluBI AGCT 6 cut(s) 405, 523, 552, 643, 889, 956
AluI AGCT 6 cut(s) 405, 523, 552, 643, 889, 956
Alw26I GTCTC 5 cut(s) 109, 670, 776, 858, 1385
AlwI GGATC 2 cut(s) 286, 452
AlwNI CAGNNNCTG 2 cut(s) 523, 1170
Ama87I CYCGRG 1 cut(s) 1152
AoxI GGCC 4 cut(s) 154, 1347, 1437, 1487
ApeKI GCWGC 5 cut(s) 600, 640, 754, 889, 956
ApoI RAATTY 4 cut(s) 279, 472, 497, 1256
AseI ATTAAT 1 cut(s) 1080
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 2 cut(s) 447, 1486
AspS9I GGNCC 2 cut(s) 1319, 1438
AsuHPI GGTGA 2 cut(s) 191, 1367
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 1 cut(s) 1319
BalI TGGCCA 1 cut(s) 1349
BanII GRGCYC 1 cut(s) 630
BarI GAAGNNNNNNTAC 2 cut(s) 828, 860
BbvI GCAGC 5 cut(s) 587, 652, 741, 876, 943
BccI CCATC 1 cut(s) 665
BceAI ACGGC 1 cut(s) 1497
BciT130I CCWGG 3 cut(s) 153, 702, 1324
BciVI GTATCC 1 cut(s) 1158
BcoDI GTCTC 5 cut(s) 109, 670, 776, 858, 1385
BfaI CTAG 5 cut(s) 533, 708, 1269, 1427, 1449
BfmI CTRYAG 4 cut(s) 660, 755, 845, 1032
BfoI RGCGCY 1 cut(s) 448
BfuI GTATCC 1 cut(s) 1158
BisI GCNGC 6 cut(s) 601, 641, 755, 890, 957, 1487
BlsI GCNGC 6 cut(s) 602, 642, 756, 891, 958, 1488
Bme1390I CCNGG 3 cut(s) 153, 702, 1324
Bme18I GGWCC 1 cut(s) 1319
BmeT110I CYCGRG 1 cut(s) 1152
BmgT120I GGNCC 2 cut(s) 1319, 1438
BmiI GGNNCC 2 cut(s) 136, 1321
BmrFI CCNGG 3 cut(s) 153, 702, 1324
BmsI GCATC 4 cut(s) 212, 580, 732, 1067
BplI GAGNNNNNCTC 2 cut(s) 1146, 1178
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 151, 1322
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 636, 807, 1098
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 1422
Bse3DI GCAATG 1 cut(s) 966
BseBI CCWGG 3 cut(s) 153, 702, 1324
BseDI CCNNGG 2 cut(s) 151, 1322
BseGI GGATG 8 cut(s) 147, 227, 585, 628, 676, 991, 1040, 1131
BseLI CCNNNNNNNGG 4 cut(s) 176, 636, 807, 1098
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 912, 1177
BseNI ACTGG 1 cut(s) 1422
BseXI GCAGC 5 cut(s) 587, 652, 741, 876, 943
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 1211, 1486
BshFI GGCC 4 cut(s) 156, 1349, 1439, 1489
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 2 cut(s) 157, 244
BslI CCNNNNNNNGG 4 cut(s) 176, 636, 807, 1098
BsmAI GTCTC 5 cut(s) 109, 670, 776, 858, 1385
BsmBI CGTCTC 3 cut(s) 109, 776, 1385
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 4 cut(s) 156, 1349, 1439, 1489
BsoBI CYCGRG 1 cut(s) 1152
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 4 cut(s) 291, 457, 1365, 1411
BspACI CCGC 1 cut(s) 1486
BspANI GGCC 4 cut(s) 156, 1349, 1439, 1489
BspCNI CTCAG 2 cut(s) 911, 1176
BspFNI CGCG 2 cut(s) 1211, 1486
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 136, 1321
BspMAI CTGCAG 2 cut(s) 664, 759
BspPI GGATC 2 cut(s) 286, 452
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 1422
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 151, 1322
BssMI GATC 4 cut(s) 291, 457, 1365, 1411
BssNI GRCGYC 1 cut(s) 769
Bst2UI CCWGG 3 cut(s) 153, 702, 1324
Bst4CI ACNGT 9 cut(s) 67, 78, 849, 1097, 1120, 1135, 1172, 1379, 1405
Bst6I CTCTTC 3 cut(s) 18, 38, 856
BstACI GRCGYC 1 cut(s) 769
BstC8I GCNNGC 4 cut(s) 407, 605, 759, 763
BstDEI CTNAG 8 cut(s) 5, 351, 635, 737, 898, 1013, 1163, 1454
BstEII GGTNACC 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 634
BstF5I GGATG 8 cut(s) 147, 227, 585, 628, 676, 991, 1040, 1131
BstFNI CGCG 2 cut(s) 1211, 1486
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 2 cut(s) 447, 1486
BstKTI GATC 4 cut(s) 294, 460, 1368, 1414
BstMAI GTCTC 5 cut(s) 109, 670, 776, 858, 1385
BstMBI GATC 4 cut(s) 291, 457, 1365, 1411
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNI CCWGG 3 cut(s) 153, 702, 1324
BstNSI RCATGY 4 cut(s) 607, 1199, 1218, 1332
BstPI GGTNACC 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 151, 700, 1322
BstSFI CTRYAG 4 cut(s) 660, 755, 845, 1032
BstUI CGCG 2 cut(s) 1211, 1486
BstV1I GCAGC 5 cut(s) 587, 652, 741, 876, 943
BstX2I RGATCY 2 cut(s) 291, 457
BstYI RGATCY 2 cut(s) 291, 457
BsuI GTATCC 1 cut(s) 1158
BsuRI GGCC 4 cut(s) 156, 1349, 1439, 1489
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 8 cut(s) 147, 227, 585, 628, 676, 991, 1040, 1131
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 3 cut(s) 63, 657, 1171
Cac8I GCNNGC 4 cut(s) 407, 605, 759, 763
CaiI CAGNNNCTG 2 cut(s) 523, 1170
CciI TCATGA 1 cut(s) 693
CfoI GCGC 2 cut(s) 447, 1486
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 1319, 1438
CseI GACGC 1 cut(s) 1217
Csp6I GTAC 4 cut(s) 312, 416, 732, 1240
CviQI GTAC 4 cut(s) 312, 416, 732, 1240
DdeI CTNAG 8 cut(s) 5, 351, 635, 737, 898, 1013, 1163, 1454
DpnI GATC 4 cut(s) 293, 459, 1367, 1413
DpnII GATC 4 cut(s) 291, 457, 1365, 1411
DraI TTTAAA 1 cut(s) 787
DraIII CACNNNGTG 1 cut(s) 1166
EaeI YGGCCR 2 cut(s) 154, 1347
Eam1104I CTCTTC 3 cut(s) 18, 38, 856
EarI CTCTTC 3 cut(s) 18, 38, 856
Eco24I GRGCYC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 1319
Eco57I CTGAAG 3 cut(s) 545, 553, 936
Eco88I CYCGRG 1 cut(s) 1152
Eco91I GGTNACC 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 634
EcoO109I RGGNCCY 1 cut(s) 1319
EcoO65I GGTNACC 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 3 cut(s) 151, 700, 1322
EcoT22I ATGCAT 1 cut(s) 1220
EcoT38I GRGCYC 1 cut(s) 630
Esp3I CGTCTC 3 cut(s) 109, 776, 1385
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
Fnu4HI GCNGC 6 cut(s) 601, 641, 755, 890, 957, 1487
FokI GGATG 8 cut(s) 134, 234, 592, 635, 683, 998, 1027, 1138
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 6 cut(s) 601, 641, 755, 890, 957, 1487
FspBI CTAG 5 cut(s) 533, 708, 1269, 1427, 1449
GlaI GCGC 2 cut(s) 446, 1485
GluI GCNGC 6 cut(s) 601, 641, 755, 890, 957, 1487
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 4 cut(s) 156, 1349, 1439, 1489
HapII CCGG 2 cut(s) 157, 244
HgaI GACGC 1 cut(s) 1217
HhaI GCGC 2 cut(s) 447, 1486
Hin1I GRCGYC 1 cut(s) 769
Hin6I GCGC 2 cut(s) 445, 1484
HinP1I GCGC 2 cut(s) 445, 1484
HincII GTYRAC 2 cut(s) 750, 1131
HindII GTYRAC 2 cut(s) 750, 1131
HindIII AAGCTT 2 cut(s) 403, 550
HinfI GANTC 6 cut(s) 240, 675, 697, 866, 896, 1338
HpaI GTTAAC 1 cut(s) 750
HpaII CCGG 2 cut(s) 157, 244
HphI GGTGA 2 cut(s) 191, 1367
Hpy166II GTNNAC 6 cut(s) 416, 732, 750, 1131, 1201, 1401
Hpy188I TCNGA 6 cut(s) 89, 239, 457, 519, 670, 901
Hpy188III TCNNGA 8 cut(s) 138, 271, 694, 983, 1269, 1317, 1415, 1427
Hpy8I GTNNAC 6 cut(s) 416, 732, 750, 1131, 1201, 1401
HpyAV CCTTC 6 cut(s) 801, 811, 1046, 1096, 1275, 1429
HpyCH4III ACNGT 9 cut(s) 67, 78, 849, 1097, 1120, 1135, 1172, 1379, 1405
HpyCH4IV ACGT 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 8 cut(s) 5, 351, 635, 737, 898, 1013, 1163, 1454
HpySE526I ACGT 1 cut(s) 769
Hsp92I GRCGYC 1 cut(s) 769
HspAI GCGC 2 cut(s) 445, 1484
KspAI GTTAAC 1 cut(s) 750
Kzo9I GATC 4 cut(s) 291, 457, 1365, 1411
LmnI GCTCC 1 cut(s) 1055
Lsp1109I GCAGC 5 cut(s) 587, 652, 741, 876, 943
LweI GCATC 4 cut(s) 212, 580, 732, 1067
MaeI CTAG 5 cut(s) 533, 708, 1269, 1427, 1449
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 4 cut(s) 127, 143, 165, 1166
MalI GATC 4 cut(s) 293, 459, 1367, 1413
MboI GATC 4 cut(s) 291, 457, 1365, 1411
MboII GAAGA 9 cut(s) 25, 35, 474, 538, 816, 848, 873, 1085, 1364
MfeI CAATTG 1 cut(s) 1025
MflI RGATCY 2 cut(s) 291, 457
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 1349
MluNI TGGCCA 1 cut(s) 1349
MlyI GAGTC 2 cut(s) 860, 890
MmeI TCCRAC 1 cut(s) 1079
MnlI CCTC 8 cut(s) 41, 134, 212, 310, 570, 885, 1012, 1161
Mox20I TGGCCA 1 cut(s) 1349
Mph1103I ATGCAT 1 cut(s) 1220
MroXI GAANNNNTTC 1 cut(s) 266
MscI TGGCCA 1 cut(s) 1349
MseI TTAA 5 cut(s) 42, 749, 786, 1080, 1110
MslI CAYNNNNRTG 2 cut(s) 608, 1396
Msp20I TGGCCA 1 cut(s) 1349
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 2 cut(s) 157, 244
MspR9I CCNGG 3 cut(s) 153, 702, 1324
MunI CAATTG 1 cut(s) 1025
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 3 cut(s) 153, 702, 1324
MvnI CGCG 2 cut(s) 1211, 1486
MwoI GCNNNNNNNGC 1 cut(s) 640
NdeII GATC 4 cut(s) 291, 457, 1365, 1411
NlaIV GGNNCC 2 cut(s) 136, 1321
NmuCI GTSAC 3 cut(s) 127, 143, 1166
NsiI ATGCAT 1 cut(s) 1220
NspI RCATGY 4 cut(s) 607, 1199, 1218, 1332
PaeI GCATGC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 1152
PagI TCATGA 1 cut(s) 693
PciI ACATGT 1 cut(s) 1328
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 4 cut(s) 240, 675, 697, 1338
PkrI GCNGC 6 cut(s) 602, 642, 756, 891, 958, 1488
PleI GAGTC 2 cut(s) 860, 890
PpsI GAGTC 2 cut(s) 860, 890
PpuMI RGGWCCY 1 cut(s) 1319
PscI ACATGT 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 1080
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 1319
Psp6I CCWGG 3 cut(s) 151, 700, 1322
PspEI GGTNACC 1 cut(s) 165
PspGI CCWGG 3 cut(s) 151, 700, 1322
PspN4I GGNNCC 2 cut(s) 136, 1321
PspPI GGNCC 2 cut(s) 1319, 1438
PspPPI RGGWCCY 1 cut(s) 1319
PspXI VCTCGAGB 1 cut(s) 1152
PstI CTGCAG 2 cut(s) 664, 759
PstNI CAGNNNCTG 2 cut(s) 523, 1170
PsuI RGATCY 2 cut(s) 291, 457
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 4 cut(s) 313, 417, 733, 1241
RsaNI GTAC 4 cut(s) 312, 416, 732, 1240
RseI CAYNNNNRTG 2 cut(s) 608, 1396
SaqAI TTAA 5 cut(s) 42, 749, 786, 1080, 1110
SatI GCNGC 6 cut(s) 601, 641, 755, 890, 957, 1487
Sau3AI GATC 4 cut(s) 291, 457, 1365, 1411
Sau96I GGNCC 2 cut(s) 1319, 1438
SchI GAGTC 2 cut(s) 860, 890
ScrFI CCNGG 3 cut(s) 153, 702, 1324
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 4 cut(s) 212, 580, 732, 1067
SfcI CTRYAG 4 cut(s) 660, 755, 845, 1032
Sfr274I CTCGAG 1 cut(s) 1152
SinI GGWCC 1 cut(s) 1319
SlaI CTCGAG 1 cut(s) 1152
SmiMI CAYNNNNRTG 2 cut(s) 608, 1396
SmlI CTYRAG 2 cut(s) 644, 1152
SmoI CTYRAG 2 cut(s) 644, 1152
SphI GCATGC 1 cut(s) 607
SsiI CCGC 1 cut(s) 1486
SspMI CTAG 5 cut(s) 533, 708, 1269, 1427, 1449
StyD4I CCNGG 3 cut(s) 151, 700, 1322
TaaI ACNGT 9 cut(s) 67, 78, 849, 1097, 1120, 1135, 1172, 1379, 1405
TaiI ACGT 1 cut(s) 772
TaqI TCGA 3 cut(s) 501, 1153, 1407
TatI WGTACW 1 cut(s) 311
TauI GCSGC 1 cut(s) 1489
TfiI GAWTC 4 cut(s) 240, 675, 697, 1338
Tru1I TTAA 5 cut(s) 42, 749, 786, 1080, 1110
Tru9I TTAA 5 cut(s) 42, 749, 786, 1080, 1110
TscAI CASTG 3 cut(s) 70, 664, 1171
TseFI GTSAC 3 cut(s) 127, 143, 1166
TseI GCWGC 5 cut(s) 600, 640, 754, 889, 956
Tsp45I GTSAC 3 cut(s) 127, 143, 1166
TspDTI ATGAA 5 cut(s) 478, 485, 897, 1291, 1293
TspRI CASTG 3 cut(s) 70, 664, 1171
VpaK11BI GGWCC 1 cut(s) 1319
VspI ATTAAT 1 cut(s) 1080
XagI CCTNNNNNAGG 1 cut(s) 634
XapI RAATTY 4 cut(s) 279, 472, 497, 1256
XbaI TCTAGA 2 cut(s) 1268, 1426
XceI RCATGY 4 cut(s) 607, 1199, 1218, 1332
XcmI CCANNNNNNNNNTGG 1 cut(s) 1330
XhoI CTCGAG 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 5 cut(s) 533, 708, 1269, 1427, 1449
ZraI GACGTC 1 cut(s) 770
Zsp2I ATGCAT 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.