RchiOBHm_Chr2g0143351

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011096
Physical Location & Seq
Reverse (-)
61057535 .. 61059119
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGAGCATCACTAGTGGCAGCCTCGTCACTAGAACATCATCCCCAACAACACCCAACTCCTCCTCCTCCTCCTCTTCGACCAAAGGCAACGGCAACACCCAGGCCTGCGCCGCCTGCAAGTACCAGCGCCGGAAGTGCGCCCCCGACTGCATACTCGCCCCTTATTTCCCTCACGACCGGCAGCGCCAGTTCCTCAACGCCCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAACACCTCGACCACCACGATAAGGAGGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCGCCTCCGACCCCGTCGGCGGCTGCTACCGGATCATCCAGGAACTCCAGCGCCTCATCGAGTACAACAAGGCCGAGCTCGACATCGTCCTCCACCAACTCGCCATCTGCCGAGCACAGGCACAGCAGCAACAGCAGCCCATAATGCAGCAGATTCCGGAGGTCGGGGACACTACCTGCGCTGATCAGATGATTAGTGTTGACCCTCTGAGCCTGTACGGAAACCCTATGCATTTTCATTATCTTCAGCAGCAGCCTAATGTGCAAGTTACTGGGCAGCAGGATCAGGGTGCCCCCTATTTGTTTGTGCAAAATACTAATGGGAATAATGGGCACCAGCAGCAGCATATGGTACCGGAGGATATGAACATGTGGGCTATGCAGGATTCCATGTCGTCGTTGCATATTAAGCATGGGATGAATGCCGGTGACTGTGAAGATATCAAGCCCTTTGTTGACATTGCCTGTGATGATGATCAGAGGAATCATGAGATCAAGTTCCAGCCTGATGCAATTGGCGACCAGAGTGATGAAGCATTGCTGAAGATAGAGGATGGCAATTTAAAAGAAGATCAGCAGAGTGAGTCAGCTGCCCAACAAGTCCATCATCATTATCAGGATCATGGTGATCTGAAAGGTGAAGCTACTTTGTTCATGACCCTCACAAATTGTAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

327

Amino Acids

36.65

Weight (kDa)

5.48

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 35 - 130 3.9e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
Acc16I TGCGCA 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 488
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 3 cut(s) 593, 636, 655
AccII CGCG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 3 cut(s) 111, 304, 324
AclWI GGATC 3 cut(s) 344, 594, 930
AcuI CTGAAG 2 cut(s) 533, 866
AcyI GRCGYC 2 cut(s) 216, 300
AfaI GTAC 4 cut(s) 122, 368, 521, 657
AfiI CCNNNNNNNGG 4 cut(s) 262, 323, 421, 467
AflIII ACRYGT 1 cut(s) 672
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 99, 342
AluBI AGCT 4 cut(s) 208, 382, 893, 947
AluI AGCT 4 cut(s) 208, 382, 893, 947
Alw21I GWGCWC 2 cut(s) 384, 421
AlwI GGATC 3 cut(s) 344, 594, 930
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 102, 270, 375
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 8 cut(s) 110, 129, 140, 186, 279, 308, 357, 485
AsuHPI GGTGA 4 cut(s) 220, 743, 941, 953
BaeGI GKGCMC 2 cut(s) 598, 639
BanI GGYRCC 3 cut(s) 593, 636, 655
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 384, 421
BccI CCATC 4 cut(s) 290, 416, 851, 915
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 101, 344
BclI TGATCA 2 cut(s) 487, 778
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 30
BfoI RGCGCY 3 cut(s) 130, 187, 358
BfuAI ACCTGC 1 cut(s) 488
Bme1390I CCNGG 2 cut(s) 101, 344
BmiI GGNNCC 3 cut(s) 595, 638, 657
BmrFI CCNGG 2 cut(s) 101, 344
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 2 cut(s) 15, 802
BmuI ACTGGG 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 216, 300
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 3 cut(s) 333, 460, 658
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 323, 421, 467
Bse118I RCCGGY 2 cut(s) 177, 728
Bse1I ACTGG 3 cut(s) 187, 292, 580
Bse3DI GCAATG 2 cut(s) 762, 839
Bse8I GATNNNNATC 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 101, 344
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 4 cut(s) 38, 339, 726, 862
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 4 cut(s) 262, 323, 421, 467
BseMI GCAATG 2 cut(s) 762, 839
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 3 cut(s) 187, 292, 580
BseRI GAGGAG 6 cut(s) 49, 52, 55, 58, 61, 281
BseSI GKGCMC 2 cut(s) 598, 639
Bsh1236I CGCG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 3 cut(s) 104, 272, 377
BshNI GGYRCC 3 cut(s) 593, 636, 655
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 384, 421
BsiSI CCGG 6 cut(s) 130, 178, 334, 461, 659, 729
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 4 cut(s) 262, 323, 421, 467
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 3 cut(s) 104, 272, 377
Bsp1286I GDGCHC 4 cut(s) 384, 421, 598, 639
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
BspACI CCGC 3 cut(s) 111, 304, 324
BspANI GGCC 3 cut(s) 104, 272, 377
BspCNI CTCAG 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 1 cut(s) 306
BspHI TCATGA 2 cut(s) 790, 957
BspLI GGNNCC 3 cut(s) 595, 638, 657
BspMI ACCTGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 344, 594, 930
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 3 cut(s) 593, 636, 655
BsrDI GCAATG 2 cut(s) 762, 839
BsrFI RCCGGY 2 cut(s) 177, 728
BsrI ACTGG 3 cut(s) 187, 292, 580
BssAI RCCGGY 2 cut(s) 177, 728
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
BssNI GRCGYC 2 cut(s) 216, 300
Bst2UI CCWGG 2 cut(s) 101, 344
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 2 cut(s) 79, 215
BstACI GRCGYC 2 cut(s) 216, 300
BstC8I GCNNGC 2 cut(s) 106, 115
BstDEI CTNAG 1 cut(s) 512
BstF5I GGATG 4 cut(s) 38, 339, 726, 862
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 3 cut(s) 130, 187, 358
BstHHI GCGC 8 cut(s) 110, 129, 140, 186, 279, 308, 357, 485
BstKTI GATC 9 cut(s) 237, 339, 490, 589, 781, 798, 877, 925, 934
BstMBI GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 9 cut(s) 110, 114, 135, 436, 439, 448, 565, 643, 712
BstNI CCWGG 2 cut(s) 101, 344
BstNSI RCATGY 1 cut(s) 676
BstSCI CCNGG 2 cut(s) 99, 342
BstSLI GKGCMC 2 cut(s) 598, 639
BstUI CGCG 1 cut(s) 306
BsuRI GGCC 3 cut(s) 104, 272, 377
BtsCI GGATG 4 cut(s) 38, 339, 726, 862
BveI ACCTGC 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 106, 115
CciI TCATGA 2 cut(s) 790, 957
CfoI GCGC 8 cut(s) 110, 129, 140, 186, 279, 308, 357, 485
Cfr10I RCCGGY 2 cut(s) 177, 728
CseI GACGC 1 cut(s) 205
Csp6I GTAC 4 cut(s) 121, 367, 520, 656
CviAII CATG 7 cut(s) 274, 673, 694, 716, 791, 926, 958
CviQI GTAC 4 cut(s) 121, 367, 520, 656
DdeI CTNAG 1 cut(s) 512
DpnI GATC 9 cut(s) 236, 338, 489, 588, 780, 797, 876, 924, 933
DpnII GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
DraI TTTAAA 1 cut(s) 867
Eam1104I CTCTTC 2 cut(s) 79, 215
EarI CTCTTC 2 cut(s) 79, 215
Ecl136II GAGCTC 1 cut(s) 382
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 533, 866
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 99, 342
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 7 cut(s) 277, 676, 697, 719, 794, 929, 961
FaqI GGGAC 1 cut(s) 485
FatI CATG 7 cut(s) 273, 672, 693, 715, 790, 925, 957
FauNDI CATATG 1 cut(s) 651
FbaI TGATCA 2 cut(s) 487, 778
FokI GGATG 4 cut(s) 25, 326, 733, 869
FriOI GRGCYC 1 cut(s) 384
FspAI RTGCGCAY 1 cut(s) 278
FspBI CTAG 2 cut(s) 12, 30
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 8 cut(s) 109, 128, 139, 185, 278, 307, 356, 484
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 3 cut(s) 130, 187, 358
HaeIII GGCC 3 cut(s) 104, 272, 377
HapII CCGG 6 cut(s) 130, 178, 334, 461, 659, 729
HgaI GACGC 1 cut(s) 205
HhaI GCGC 8 cut(s) 110, 129, 140, 186, 279, 308, 357, 485
Hin1I GRCGYC 2 cut(s) 216, 300
Hin1II CATG 7 cut(s) 277, 676, 697, 719, 794, 929, 961
Hin6I GCGC 8 cut(s) 108, 127, 138, 184, 277, 306, 355, 483
HinP1I GCGC 8 cut(s) 108, 127, 138, 184, 277, 306, 355, 483
HincII GTYRAC 2 cut(s) 505, 760
HindII GTYRAC 2 cut(s) 505, 760
HinfI GANTC 4 cut(s) 457, 689, 787, 887
HpaII CCGG 6 cut(s) 130, 178, 334, 461, 659, 729
HphI GGTGA 4 cut(s) 220, 743, 941, 953
Hpy166II GTNNAC 2 cut(s) 505, 760
Hpy188I TCNGA 6 cut(s) 298, 313, 492, 513, 783, 936
Hpy188III TCNNGA 5 cut(s) 173, 461, 791, 920, 958
Hpy8I GTNNAC 2 cut(s) 505, 760
Hpy99I CGWCG 3 cut(s) 302, 323, 703
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 9 cut(s) 117, 150, 451, 535, 568, 613, 685, 706, 815
HpyF10VI GCNNNNNNNGC 9 cut(s) 110, 114, 135, 436, 439, 448, 565, 643, 712
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 216, 300
Hsp92II CATG 7 cut(s) 277, 676, 697, 719, 794, 929, 961
HspAI GCGC 8 cut(s) 108, 127, 138, 184, 277, 306, 355, 483
Kpn2I TCCGGA 1 cut(s) 460
KpnI GGTACC 1 cut(s) 659
Ksp22I TGATCA 2 cut(s) 487, 778
Kzo9I GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
LguI GCTCTTC 1 cut(s) 215
LweI GCATC 2 cut(s) 15, 802
MaeI CTAG 2 cut(s) 12, 30
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 3 cut(s) 25, 571, 731
MalI GATC 9 cut(s) 236, 338, 489, 588, 780, 797, 876, 924, 933
MboI GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
MboII GAAGA 6 cut(s) 66, 202, 539, 752, 859, 884
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 4 cut(s) 384, 421, 598, 639
MluCI AATT 3 cut(s) 816, 862, 970
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 2 cut(s) 321, 336
Mph1103I ATGCAT 1 cut(s) 537
MroI TCCGGA 1 cut(s) 460
MseI TTAA 2 cut(s) 711, 866
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 6 cut(s) 130, 178, 334, 461, 659, 729
MspR9I CCNGG 2 cut(s) 101, 344
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 101, 344
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 9 cut(s) 110, 114, 135, 436, 439, 448, 565, 643, 712
NdeI CATATG 1 cut(s) 651
NdeII GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
NlaIII CATG 7 cut(s) 277, 676, 697, 719, 794, 929, 961
NlaIV GGNNCC 3 cut(s) 595, 638, 657
NmeAIII GCCGAG 2 cut(s) 403, 440
NmuCI GTSAC 2 cut(s) 25, 731
NsbI TGCGCA 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 1 cut(s) 676
PagI TCATGA 2 cut(s) 790, 957
PceI AGGCCT 1 cut(s) 104
PciI ACATGT 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 730
PfeI GAWTC 3 cut(s) 457, 689, 787
PflFI GACNNNGTC 2 cut(s) 317, 389
PfoI TCCNGGA 1 cut(s) 342
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
PscI ACATGT 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 99, 342
PspGI CCWGG 2 cut(s) 99, 342
PspN4I GGNNCC 3 cut(s) 595, 638, 657
PsyI GACNNNGTC 2 cut(s) 317, 389
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 4 cut(s) 122, 368, 521, 657
RsaNI GTAC 4 cut(s) 121, 367, 520, 656
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 711, 866
Sau3AI GATC 9 cut(s) 234, 336, 487, 586, 778, 795, 874, 922, 931
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 2 cut(s) 101, 344
SduI GDGCHC 4 cut(s) 384, 421, 598, 639
SetI ASST 9 cut(s) 210, 249, 303, 384, 468, 482, 895, 943, 949
SfaNI GCATC 2 cut(s) 15, 802
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 816, 862, 970
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 3 cut(s) 111, 304, 324
SspMI CTAG 2 cut(s) 12, 30
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 99, 342
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 303
TaqI TCGA 4 cut(s) 77, 249, 363, 384
TasI AATT 3 cut(s) 816, 862, 970
TatI WGTACW 1 cut(s) 366
TauI GCSGC 2 cut(s) 113, 327
TfiI GAWTC 3 cut(s) 457, 689, 787
Tru1I TTAA 2 cut(s) 711, 866
Tru9I TTAA 2 cut(s) 711, 866
TseFI GTSAC 2 cut(s) 25, 731
Tsp45I GTSAC 2 cut(s) 25, 731
TspDTI ATGAA 5 cut(s) 530, 683, 737, 849, 946
TspGWI ACGGA 1 cut(s) 537
Tth111I GACNNNGTC 2 cut(s) 317, 389
XceI RCATGY 1 cut(s) 676
XspI CTAG 2 cut(s) 12, 30
ZraI GACGTC 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.