RchiOBHm_Chr2g0145111

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005411
Physical Location & Seq
Forward (+)
62700970 .. 62704345
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGGCGGGTGTACTTCCTTGTTCATCATCAACTCTCTCTCTACTAACTCCACTCAATTTCCATTCTCAAGAGCAATGCAGAGCTTTGTATTCTCAATCTTTAAGCACCCAAAGGTGTGGCCTTTTTGTTTGTGCTGCCAAGAAGAAAGTTAGTTTCACAGACCAAATTCTTGATTACATTGAGGGGGGTCCTAAGTTGAGGAAATGGTATGGGGCACCTGAACTTTTACCTAAGGATGGGTCTGTTGCTGAAGATGAGGACGAATTATCAGAAGGAGATGAAACCAGGGATGCTGTTTTGGTAACTGACGGAGATAGCGAGATGGGGCAGATGGTAATATTGTCATTGATTGTCAAAAGAGCTAGAGTAAAAGCATTGGTGAAGGATAAGCGGGCTGCACTTGAAGCATTTGGAACTTATGTTGAGTCATTGACTGGAGATTCAAGGGACAAGCCATTCCTAAGGAGAGTGCTGAGAGGAGTTTCCACAGTAATATGCCCAAATGAAGGTTTCTTATCTACTGTTGGGAGCTTGAAAGGGGTAAACCATGTCATTCTCTTATCTCAGCAGTTGTCTGTTTACAAAGGTGCCGGTGGCATTCAAGCTCTCATGAAAAGCAATGCAAGAAAATTAGCCGAAGAAGATGAGTCAATACTGATGGCCTCAGGAATCCCTTACACCATCATCAGGGCTGGCTCGTTACAAAATTCTCCAGGTGGAACTCAGGGCTTTAGCTTTGAAAAGGGAACTGCAGCAAAAGGAACTCTTAGCAAAGAGGATGCGGCCTTTATTTGTGTGGAAGCAGTTGATGCAGTCCCCAAGGAAAGATTCATATTTGAGGTGGTGAATGGAGATGACAAGGTTTCAGATTGGAAAGAATGTTTGAATAGACTAATGGAGAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

302

Amino Acids

32.74

Weight (kDa)

5.66

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_10 PF13460 108 - 270 2.1e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 214, 587
AciI CCGC 3 cut(s) 5, 391, 782
AcsI RAATTY 2 cut(s) 165, 706
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 236, 506, 687
AgsI TTSAA 6 cut(s) 404, 444, 535, 602, 740, 886
AjnI CCWGG 2 cut(s) 284, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 5 cut(s) 83, 362, 531, 605, 735
AluI AGCT 5 cut(s) 83, 362, 531, 605, 735
AoxI GGCC 3 cut(s) 118, 660, 783
ApeKI GCWGC 3 cut(s) 134, 395, 752
ApoI RAATTY 2 cut(s) 165, 706
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 391, 856
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 3 cut(s) 231, 461, 664
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 2 cut(s) 214, 587
BbvI GCAGC 3 cut(s) 121, 382, 764
BccI CCATC 5 cut(s) 230, 316, 325, 652, 689
BciT130I CCWGG 2 cut(s) 286, 714
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 4 cut(s) 135, 396, 753, 783
BlsI GCNGC 4 cut(s) 136, 397, 754, 784
Bme1390I CCNGG 2 cut(s) 286, 714
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 189, 216, 589
BmrFI CCNGG 2 cut(s) 286, 714
BmsI GCATC 3 cut(s) 280, 769, 799
BpmI CTGGAG 2 cut(s) 456, 696
BpuEI CTTGAG 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 285, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 506, 687
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 439
Bse21I CCTNAGG 3 cut(s) 231, 461, 664
Bse3DI GCAATG 2 cut(s) 80, 625
BseBI CCWGG 2 cut(s) 286, 714
BseDI CCNNGG 2 cut(s) 285, 819
BseGI GGATG 3 cut(s) 241, 295, 784
BseLI CCNNNNNNNGG 3 cut(s) 236, 506, 687
BseMI GCAATG 2 cut(s) 80, 625
BseMII CTCAG 4 cut(s) 464, 578, 678, 737
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 3 cut(s) 121, 382, 764
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 3 cut(s) 120, 662, 785
BshNI GGYRCC 2 cut(s) 214, 587
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 2 cut(s) 461, 800
BslI CCNNNNNNNGG 3 cut(s) 236, 506, 687
BsmFI GGGAC 2 cut(s) 461, 800
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 3 cut(s) 120, 662, 785
Bsp1286I GDGCHC 1 cut(s) 217
BspACI CCGC 3 cut(s) 5, 391, 782
BspANI GGCC 3 cut(s) 120, 662, 785
BspCNI CTCAG 4 cut(s) 465, 577, 677, 736
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 3 cut(s) 189, 216, 589
BspMAI CTGCAG 1 cut(s) 754
BspT107I GGYRCC 2 cut(s) 214, 587
BsrDI GCAATG 2 cut(s) 80, 625
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 285, 819
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 2 cut(s) 286, 714
Bst4CI ACNGT 2 cut(s) 490, 523
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 393, 694
BstDEI CTNAG 8 cut(s) 192, 231, 461, 473, 564, 664, 723, 767
BstF5I GGATG 3 cut(s) 241, 295, 784
BstMWI GCNNNNNNNGC 2 cut(s) 404, 809
BstNI CCWGG 2 cut(s) 286, 714
BstSCI CCNGG 2 cut(s) 284, 712
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 121, 382, 764
BstXI CCANNNNNNTGG 1 cut(s) 116
Bsu36I CCTNAGG 3 cut(s) 231, 461, 664
BsuRI GGCC 3 cut(s) 120, 662, 785
BtsCI GGATG 3 cut(s) 241, 295, 784
Cac8I GCNNGC 2 cut(s) 393, 694
CciI TCATGA 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 11
CviAII CATG 2 cut(s) 548, 610
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 8 cut(s) 192, 231, 461, 473, 564, 664, 723, 767
Eco130I CCWWGG 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 270
Eco81I CCTNAGG 3 cut(s) 231, 461, 664
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 284, 712
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 2 cut(s) 551, 613
FaiI YATR 6 cut(s) 210, 420, 496, 549, 611, 833
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 461, 800
FatI CATG 2 cut(s) 547, 609
FauI CCCGC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 135, 396, 753, 783
FokI GGATG 3 cut(s) 248, 302, 791
Fsp4HI GCNGC 4 cut(s) 135, 396, 753, 783
FspBI CTAG 1 cut(s) 363
GluI GCNGC 4 cut(s) 135, 396, 753, 783
GsuI CTGGAG 2 cut(s) 456, 696
HaeIII GGCC 3 cut(s) 120, 662, 785
HapII CCGG 1 cut(s) 591
Hin1II CATG 2 cut(s) 551, 613
HinfI GANTC 5 cut(s) 425, 440, 647, 669, 828
HpaII CCGG 1 cut(s) 591
HphI GGTGA 2 cut(s) 391, 856
Hpy166II GTNNAC 3 cut(s) 11, 544, 580
Hpy188I TCNGA 2 cut(s) 271, 868
Hpy188III TCNNGA 4 cut(s) 68, 170, 610, 666
Hpy8I GTNNAC 3 cut(s) 11, 544, 580
HpyAV CCTTC 3 cut(s) 266, 376, 500
HpyCH4III ACNGT 2 cut(s) 490, 523
HpyCH4V TGCA 5 cut(s) 78, 398, 623, 752, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 809
HpyF3I CTNAG 8 cut(s) 192, 231, 461, 473, 564, 664, 723, 767
Hsp92II CATG 2 cut(s) 551, 613
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 3 cut(s) 121, 382, 764
LweI GCATC 3 cut(s) 280, 769, 799
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 301, 699
MboII GAAGA 4 cut(s) 154, 263, 650, 653
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 5 cut(s) 55, 165, 263, 629, 706
MlyI GAGTC 2 cut(s) 434, 656
MnlI CCTC 7 cut(s) 175, 192, 250, 470, 673, 769, 832
MseI TTAA 2 cut(s) 101, 907
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 286, 714
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 2 cut(s) 286, 714
MwoI GCNNNNNNNGC 2 cut(s) 404, 809
NlaIII CATG 2 cut(s) 551, 613
NlaIV GGNNCC 3 cut(s) 189, 216, 589
PagI TCATGA 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 440, 669, 828
PkrI GCNGC 4 cut(s) 136, 397, 754, 784
PleI GAGTC 2 cut(s) 433, 655
PpsI GAGTC 2 cut(s) 433, 655
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 284, 712
PspGI CCWGG 2 cut(s) 284, 712
PspN4I GGNNCC 3 cut(s) 189, 216, 589
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 754
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 101, 907
SatI GCNGC 4 cut(s) 135, 396, 753, 783
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 434, 656
ScrFI CCNGG 2 cut(s) 286, 714
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 3 cut(s) 280, 769, 799
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 5 cut(s) 55, 165, 263, 629, 706
SsiI CCGC 3 cut(s) 5, 391, 782
SspI AATATT 1 cut(s) 339
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 284, 712
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 2 cut(s) 490, 523
TasI AATT 5 cut(s) 55, 165, 263, 629, 706
TatI WGTACW 1 cut(s) 10
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 3 cut(s) 440, 669, 828
Tru1I TTAA 2 cut(s) 101, 907
Tru9I TTAA 2 cut(s) 101, 907
TseI GCWGC 3 cut(s) 134, 395, 752
TspDTI ATGAA 5 cut(s) 12, 294, 519, 626, 820
TspGWI ACGGA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 165, 706
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.