Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

64142810 .. 64143955

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGTCTTTGCTGTCTAAGATGAAAGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTGGCCCTCGGTGCACAAGCCGTCCTTGTAAAGATCTCCATGCCACTACTGTTTGAATCATCTAGCTTATCAATCTTTTTATACATTTTTTCCTGCGAGAATTGTAATGTAAATGTGTTAGTGCAGGTTGGAAGGCCGGTTATCTATGGCCTTGCAGCAAATGGAGAAAATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGAAAGACTCCGCTCCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

136

Amino Acids

14.83

Weight (kDa)

9.51

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	9 - 45	1.6e-14	FMN-dependent dehydrogenase
FMN_dh	PF01070	76 - 126	2.5e-16	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccBSI	CCGCTC	1 cut(s)	399
AciI	CCGC	1 cut(s)	397
AcvI	CACGTG	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	35, 100, 161, 304
AjnI	CCWGG	1 cut(s)	362
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	38, 171, 319, 406
AluI	AGCT	4 cut(s)	38, 171, 319, 406
Alw21I	GWGCWC	2 cut(s)	121, 321
Alw44I	GTGCAC	1 cut(s)	117
AoxI	GGCC	3 cut(s)	108, 239, 253
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	321
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	121, 321
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	95, 110
BciT130I	CCWGG	1 cut(s)	364
BfaI	CTAG	2 cut(s)	168, 345
BfuAI	ACCTGC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	138
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse118I	RCCGGY	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	110, 241, 255
BsiHKAI	GWGCWC	2 cut(s)	121, 321
BsiSI	CCGG	1 cut(s)	242
BsnI	GGCC	3 cut(s)	110, 241, 255
Bsp1286I	GDGCHC	2 cut(s)	121, 321
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	3 cut(s)	110, 241, 255
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	110, 241, 255
BtsCI	GGATG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	2 cut(s)	145, 292
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	319
Eco72I	CACGTG	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	2 cut(s)	148, 295
FaiI	YATR	5 cut(s)	146, 187, 252, 293, 326
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	2 cut(s)	144, 291
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	168, 345
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	3 cut(s)	110, 241, 255
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	148, 295
HinfI	GANTC	2 cut(s)	161, 393
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	231, 298
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	119, 229, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	148, 295
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	366, 404
LpnPI	CCDG	7 cut(s)	69, 211, 215, 255, 321, 349, 376
Lsp1109I	GCAGC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	168, 345
MaeII	ACGT	1 cut(s)	372
MalI	GATC	1 cut(s)	140
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	88, 307
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	121, 321
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	22, 214
MnlI	CCTC	4 cut(s)	38, 65, 77, 122
MseI	TTAA	2 cut(s)	351, 409
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	148, 295
NlaIV	GGNNCC	1 cut(s)	368
PagI	TCATGA	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	387
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	362
PspCI	CACGTG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	351, 409
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	121, 321
SetI	ASST	7 cut(s)	40, 173, 234, 291, 321, 375, 408
SmiMI	CAYNNNNRTG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	168, 345
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	375
TasI	AATT	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	351, 409
Tru9I	TTAA	2 cut(s)	351, 409
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	17, 38, 308
VneI	GTGCAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	168, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.