E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471 |
| rosa_multiflora | Rmu_ssc0000175.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360 |
| rosa_rugosa | Rorug05G0030700 Rorug05G0531300.1 |
| rosa_samantha | Rh2BG595000 Rh7BG190400 Rh7BG475700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjnI | CCWGG | 1 cut(s) | 28 |
| Alw26I | GTCTC | 1 cut(s) | 87 |
| ApeKI | GCWGC | 2 cut(s) | 4, 25 |
| BbvI | GCAGC | 1 cut(s) | 12 |
| BciT130I | CCWGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 1 cut(s) | 87 |
| BfaI | CTAG | 1 cut(s) | 48 |
| BisI | GCNGC | 2 cut(s) | 5, 26 |
| BlsI | GCNGC | 2 cut(s) | 6, 27 |
| Bme1390I | CCNGG | 1 cut(s) | 30 |
| BmrFI | CCNGG | 1 cut(s) | 30 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| Bse1I | ACTGG | 1 cut(s) | 96 |
| BseBI | CCWGG | 1 cut(s) | 30 |
| BseNI | ACTGG | 1 cut(s) | 96 |
| BseXI | GCAGC | 1 cut(s) | 12 |
| BsmAI | GTCTC | 1 cut(s) | 87 |
| BsrI | ACTGG | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 1 cut(s) | 45 |
| BstDEI | CTNAG | 1 cut(s) | 8 |
| BstMAI | GTCTC | 1 cut(s) | 87 |
| BstNI | CCWGG | 1 cut(s) | 30 |
| BstSCI | CCNGG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 12 |
| Cac8I | GCNNGC | 1 cut(s) | 45 |
| CviJI | RGCY | 2 cut(s) | 25, 58 |
| CviKI_1 | RGCY | 2 cut(s) | 25, 58 |
| DdeI | CTNAG | 1 cut(s) | 8 |
| EcoRII | CCWGG | 1 cut(s) | 28 |
| FaiI | YATR | 3 cut(s) | 102, 104, 110 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 26 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 26 |
| FspBI | CTAG | 1 cut(s) | 48 |
| GluI | GCNGC | 2 cut(s) | 5, 26 |
| HpyF3I | CTNAG | 1 cut(s) | 8 |
| LpnPI | CCDG | 4 cut(s) | 15, 42, 57, 109 |
| Lsp1109I | GCAGC | 1 cut(s) | 12 |
| MaeI | CTAG | 1 cut(s) | 48 |
| MnlI | CCTC | 4 cut(s) | 15, 48, 60, 68 |
| MspR9I | CCNGG | 1 cut(s) | 30 |
| MvaI | CCWGG | 1 cut(s) | 30 |
| PkrI | GCNGC | 2 cut(s) | 6, 27 |
| Psp6I | CCWGG | 1 cut(s) | 28 |
| PspGI | CCWGG | 1 cut(s) | 28 |
| SatI | GCNGC | 2 cut(s) | 5, 26 |
| ScrFI | CCNGG | 1 cut(s) | 30 |
| SetI | ASST | 1 cut(s) | 71 |
| SgeI | CNNG | 6 cut(s) | 41, 42, 56, 60, 74, 108 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| SspMI | CTAG | 1 cut(s) | 48 |
| StyD4I | CCNGG | 1 cut(s) | 28 |
| TseI | GCWGC | 2 cut(s) | 4, 25 |
| TspDTI | ATGAA | 2 cut(s) | 119, 125 |
| XspI | CTAG | 1 cut(s) | 48 |