Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012683

Physical Location & Seq

Genomic Coordinates Reverse (-)

14410142 .. 14415766

Gene Structure 5625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATTCGCCTCCTTGCTGCGGTCGTCTCTGTGGTGGTCTCCATCGACGATTCCTATTCACGGCGACGCCGCAAGTCGGCCCGGTTGAGGAAAGCGGACCGGCCGGAAAACACGGCTCCGACGTTGGCAAGGCTTCGATTTTTCTTGAGGTACTTTAGATTAGGAGTACGTCTACGATTTGCAATGGGTGGCAGCGGTGAACGTCCATGGTGCGGTGATTCGATGAAGATGATTCCTAGTGGCGGGGTTGGGATGATGATCGGTGGCGATGACCCGTTAGAGGCAACTTGGCTTGGTGCCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.2

Weight (kDa)

11.25

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471
rosa_multiflora	Rmu_ssc0000175.1_g000014
rosa_roxburghii	Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360
rosa_rugosa	Rorug05G0030700 Rorug05G0531300.1
rosa_samantha	Rh2BG595000 Rh7BG190400 Rh7BG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	6 cut(s)	20, 70, 95, 195, 213, 243
AcoI	YGGCCR	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	152, 168
AfiI	CCNNNNNNNGG	7 cut(s)	19, 60, 76, 87, 212, 242, 280
Alw26I	GTCTC	2 cut(s)	31, 43
AoxI	GGCC	2 cut(s)	78, 101
ApeKI	GCWGC	2 cut(s)	17, 192
AspS9I	GGNCC	2 cut(s)	79, 97
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	209, 227
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	4, 204
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	2 cut(s)	77, 129
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	31, 43
BfaI	CTAG	2 cut(s)	237, 304
BisI	GCNGC	3 cut(s)	18, 70, 193
BlsI	GCNGC	3 cut(s)	19, 71, 194
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	79, 97
BmiI	GGNNCC	2 cut(s)	117, 298
BmrFI	CCNGG	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	7 cut(s)	19, 60, 76, 87, 212, 242, 280
Bse118I	RCCGGY	2 cut(s)	99, 299
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	7 cut(s)	19, 60, 76, 87, 212, 242, 280
BseMI	GCAATG	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	4, 204
Bsh1285I	CGRYCG	2 cut(s)	24, 104
BshFI	GGCC	2 cut(s)	80, 103
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	2 cut(s)	24, 104
BsiSI	CCGG	4 cut(s)	82, 100, 104, 300
BslI	CCNNNNNNNGG	7 cut(s)	19, 60, 76, 87, 212, 242, 280
BsmAI	GTCTC	2 cut(s)	31, 43
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	80, 103
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	6 cut(s)	20, 70, 95, 195, 213, 243
BspANI	GGCC	2 cut(s)	80, 103
BspLI	GGNNCC	2 cut(s)	117, 298
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	99, 299
BssAI	RCCGGY	2 cut(s)	99, 299
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	31, 43
BstMBI	GATC	1 cut(s)	258
BstMCI	CGRYCG	2 cut(s)	24, 104
BstSCI	CCNGG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	4, 204
BstZI	CGGCCG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	80, 103
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	301
Cfr10I	RCCGGY	2 cut(s)	99, 299
Cfr13I	GGNCC	2 cut(s)	79, 97
CpoI	CGGWCCG	1 cut(s)	97
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	151, 167
CspI	CGGWCCG	1 cut(s)	97
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	80, 103, 116, 133, 292, 303
CviKI_1	RGCY	6 cut(s)	80, 103, 116, 133, 292, 303
CviQI	GTAC	2 cut(s)	151, 167
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	210
FaiI	YATR	1 cut(s)	208
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	18, 70, 193
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	3 cut(s)	18, 70, 193
FspBI	CTAG	2 cut(s)	237, 304
GluI	GCNGC	3 cut(s)	18, 70, 193
HaeIII	GGCC	2 cut(s)	80, 103
HapII	CCGG	4 cut(s)	82, 100, 104, 300
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	210
HinfI	GANTC	4 cut(s)	4, 50, 218, 232
HpaII	CCGG	4 cut(s)	82, 100, 104, 300
HphI	GGTGA	2 cut(s)	209, 227
Hpy166II	GTNNAC	2 cut(s)	173, 200
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	173, 200
Hpy99I	CGWCG	3 cut(s)	50, 69, 124
HpyCH4IV	ACGT	3 cut(s)	122, 169, 202
HpyCH4V	TGCA	1 cut(s)	182
HpySE526I	ACGT	3 cut(s)	122, 169, 202
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	95, 113, 117
Lsp1109I	GCAGC	2 cut(s)	4, 204
MaeI	CTAG	2 cut(s)	237, 304
MaeII	ACGT	3 cut(s)	122, 169, 202
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	20, 81, 141, 274
MroNI	GCCGGC	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	4 cut(s)	82, 100, 104, 300
MspR9I	CCNGG	1 cut(s)	82
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	258
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	117, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	4, 50, 218, 232
PkrI	GCNGC	3 cut(s)	19, 71, 194
PspN4I	GGNNCC	2 cut(s)	117, 298
PspPI	GGNCC	2 cut(s)	79, 97
RsaI	GTAC	2 cut(s)	152, 168
RsaNI	GTAC	2 cut(s)	151, 167
Rsr2I	CGGWCCG	1 cut(s)	97
RsrII	CGGWCCG	1 cut(s)	97
SatI	GCNGC	3 cut(s)	18, 70, 193
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	2 cut(s)	79, 97
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	4 cut(s)	125, 152, 172, 205
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SsiI	CCGC	6 cut(s)	20, 70, 95, 195, 213, 243
SspMI	CTAG	2 cut(s)	237, 304
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	206
TaiI	ACGT	3 cut(s)	125, 172, 205
TaqI	TCGA	3 cut(s)	45, 136, 221
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	4, 50, 218, 232
TseI	GCWGC	2 cut(s)	17, 192
TspDTI	ATGAA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	2 cut(s)	237, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.