Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012683

Physical Location & Seq

Genomic Coordinates Forward (+)

8858697 .. 8861510

Gene Structure 2814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTTAAGTCAGATTTCCTTACTGTGATTGTTGTTTGGCAGAACTTGACCGGAATTAAAGGTTTATCTGAGGCCAAAGTTGATAAGATTTGTGAAGCTGCTGAGAAAATAGTGAACTTTGGATATATTACTGGGAGTGATGCTATAACCAGACTTCCTACTAACATGCATGGAGGGAATGGAAAGATCGTTTATGCTCGTGCTTTTACATATGAGCATCAGTATAATCTGCTTCTTGGTCTAGCTGCAAAAATGGCTGAAGAGCCATTCAGACTTCTGGTAAAGACTTCAGTACTTTTTTTTTTTTTTTTTTTGAATAAGGGATTAGGCGATATTAGCTCCTCGGAGGCAAACGATGTAGGGAACAAGTCCCACCCTCAATCCCGAAGGAGAGGGGTTTGCCACACTCTGGGAACCCACCGCCCGTCCCCCTATTATTATTTCATTAATAACATAAAAAAGAAAATACAACCTAAAGAAGGGGGGGACATAAACCTTACCCAAAAAGCTAGAAAGAAAGTCAAAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

177

Amino Acids

19.96

Weight (kDa)

9.88

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	62 - 114	1.1e-07	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471
rosa_multiflora	Rmu_ssc0000175.1_g000014
rosa_roxburghii	Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360
rosa_rugosa	Rorug05G0030700 Rorug05G0531300.1
rosa_samantha	Rh2BG595000 Rh7BG190400 Rh7BG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	409
AciI	CCGC	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	273, 279
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	409, 479
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	4 cut(s)	98, 245, 339, 509
AluI	AGCT	4 cut(s)	98, 245, 339, 509
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	98, 245
AseI	ATTAAT	1 cut(s)	447
BauI	CACGAG	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	85, 232
BfaI	CTAG	2 cut(s)	242, 510
BisI	GCNGC	2 cut(s)	99, 246
BlsI	GCNGC	2 cut(s)	100, 247
BmcAI	AGTACT	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	130, 226
BmuI	ACTGGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 479
Bse1I	ACTGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	409, 479
BseMII	CTCAG	2 cut(s)	60, 93
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	85, 232
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	3 cut(s)	355, 412, 500
BslI	CCNNNNNNNGG	2 cut(s)	409, 479
BsmFI	GGGAC	3 cut(s)	355, 412, 500
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	2 cut(s)	61, 94
BspLI	GGNNCC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	69, 102
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 336
BstNSI	RCATGY	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	85, 232
BsuRI	GGCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	166, 170
CviJI	RGCY	7 cut(s)	74, 98, 245, 257, 265, 339, 509
CviKI_1	RGCY	7 cut(s)	74, 98, 245, 257, 265, 339, 509
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	69, 102
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	273, 279
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	171
FaeI	CATG	2 cut(s)	169, 173
FaqI	GGGAC	3 cut(s)	355, 412, 500
FatI	CATG	2 cut(s)	165, 169
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	99, 246
Fsp4HI	GCNGC	2 cut(s)	99, 246
FspBI	CTAG	2 cut(s)	242, 510
GluI	GCNGC	2 cut(s)	99, 246
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	169, 173
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	13, 70, 272, 346
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	381, 473
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	169, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 336
HpyF3I	CTNAG	2 cut(s)	69, 102
Hsp92II	CATG	2 cut(s)	169, 173
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	64, 117, 163, 263, 395
Lsp1109I	GCAGC	2 cut(s)	85, 232
LweI	GCATC	2 cut(s)	130, 226
MaeI	CTAG	2 cut(s)	242, 510
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	272
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	6 cut(s)	64, 167, 340, 352, 386, 387
Mph1103I	ATGCAT	1 cut(s)	171
MseI	TTAA	3 cut(s)	6, 57, 447
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	254, 336
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	169, 173
NlaIV	GGNNCC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	100, 247
PshBI	ATTAAT	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	415
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	6, 57, 447
SatI	GCNGC	2 cut(s)	99, 246
Sau3AI	GATC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	294
SetI	ASST	7 cut(s)	64, 100, 247, 341, 475, 498, 511
SfaNI	GCATC	2 cut(s)	130, 226
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	2 cut(s)	242, 510
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	3 cut(s)	6, 57, 447
Tru9I	TTAA	3 cut(s)	6, 57, 447
TseI	GCWGC	2 cut(s)	98, 245
TspDTI	ATGAA	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	477
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	2 cut(s)	242, 510
ZrmI	AGTACT	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.